RRC ID 70199
著者 Berba CMP, Matias AMA.
タイトル State of biodiversity documentation in the Philippines: Metadata gaps, taxonomic biases, and spatial biases in the DNA barcode data of animal and plant taxa in the context of species occurrence data.
ジャーナル PeerJ
Abstract Anthropogenic changes in the natural environment have led to alarming rates of biodiversity loss, resulting in a more urgent need for conservation. Although there is an increasing cognizance of the importance of incorporating biodiversity data into conservation, the accuracy of the inferences generated from these records can be highly impacted by gaps and biases in the data. Because of the Philippines' status as a biodiversity hotspot, the assessment of potential gaps and biases in biodiversity documentation in the country can be a critical step in the identification of priority research areas for conservation applications. In this study, we systematically assessed biodiversity data on animal and plant taxa found in the Philippines by examining the extent of metadata gaps, taxonomic biases, and spatial biases in DNA barcode data while using species occurrence data as a backdrop of the 'Philippines' biodiversity. These barcode and species occurrence datasets were obtained from public databases, namely: GenBank, Barcode of Life Data System and Global Biodiversity Information Facility. We found that much of the barcode data had missing information on either records and publishing, geolocation, or taxonomic metadata, which consequently, can limit the usability of barcode data for further analyses. We also observed that the amount of barcode data can be directly associated with the amount of species occurrence data available for a particular taxonomic group and location-highlighting the potential sampling biases in the barcode data. While the majority of barcode data came from foreign institutions, there has been an increase in local efforts in recent decades. However, much of the contribution to biodiversity documentation only come from institutions based in Luzon.
巻・号 10
ページ e13146
公開日 2022-3-21
DOI 10.7717/peerj.13146
PII 13146
PMID 35341040
PMC PMC8944339
MeSH Animals Bias Biodiversity DNA Barcoding, Taxonomic* / methods Documentation Metadata* Philippines
IF 2.379
リソース情報
GBIF Mollusca collection of National Museum of Nature and Science Mollusca specimens of Okinawa Prefectural Museum & Art Museum Insect specimens of Himeji City Science Museum The Araneae Collection of the National Museum of Nature and Science Insect specimens of Iwate Prefectural Museum Insect specimens of Toyota City Nature Sanctuary Asia-Pacific Dataset Hymenoptera specimen database of Kyushu University The Suguru Igarashi Insect Collection (Lepidoptera: Lycaenidae) of The University Museum, The University of Tokyo Aschelminth collection of National Museum of Nature and Science The Shigeru Eda Insect Collection of The University Museum, The University of Tokyo Insect specimen database of Kanagawa Prefectural Museum of Natural History Herpetological specimens of Okinawa Prefectural Museum & Art Museum Crustacean collection of the National Museum of Nature and Science Hemiptera (Heteroptera) collection of National Museum of Nature and Science Kyushu University Museum Coleoptera Collection The Suguru Igarashi Insect Collection (Lepidoptera: Papilionidae) of The University Museum, The University of Tokyo Plant specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Type Collection of the Seto Marine Biological Laboratory, Kyoto University Insect specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Cnidaria Collection of the Seto Marine Biological Laboratory, Kyoto University Invertebrate (minor phyla) collection of Osaka Museum of Natural History Mollusca Collection of Natural History Museum and Institute, Chiba Molluscan collection of Osaka Museum of Natural History Bird specimens of the Yamashina Institute for Ornithology Flora of Japan Specimen Database Insect specimens of Okinawa Prefectural Museum & Art Museum Diptera collection of National Museum of Nature and Science Crustacea specimens of Wakayama Prefectural Museum of Natural History Entomological Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Plant specimens deposited in Osaka Museum of Natural History, Japan Insect collection of Itami City Museum of Insects Neuroptera collection of National Museum of Nature and Science Diversity and community structure of pelagic cnidarians in south-east Asian tropical marginal Seas Insect specimens of Ryukyu University Museum (Fujukan) Molluscan specimen database of Kanagawa Prefectural Museum of Natural History Gunma Museum of Natural History, Insect Specimen Lepidoptera collection of National Museum of Nature and Science Crustacean specimen database of Kanagawa Prefectural Museum of Natural History Insecta collection of Museum of Natural and Environmental History, Shizuoka Dry specimens of Recent Mollusca in the Department of Historical Geology and Paleontology, The University Museum, The University of Tokyo (UMUT) Mollusca specimens of Ryukyu University Museum (Fujukan) Other Arachnida collection of National Museum of Nature and Science Platyhelminth collection of National Museum of Nature and Science Odonata collection of National Museum of Nature and Science Mollusca specimens of Manazuru Shell Museum The Suguru Igarashi Insect Collection (Lepidoptera: Hesperiidae) of The University Museum, The University of Tokyo Coleoptera collection of National Museum of Nature and Science Fish Collection of Coastal Branch of Natural History Museum and Institute, Chiba Mollusca specimens of Toyama Science Museum Hymenoptera collection of National Museum of Nature and Science Bird Specimens in the Museum of Nature and Human Activities, Hyogo, Japan Invertebrate specimens in the Wakayama Prefectural Museum of Natural History, Japan. Marine Invertebrata specimen database of Osaka Museum of Natutal History Echinoderm specimens of Ryukyu University Museum (Fujukan) Lepidoptera specimen database of Japan Crustacea Collection of Natural History Museum and Institute, Chiba Marine Invertebrata specimens deposited in the Fukui City Museum of Natural History, Japan Akita Prefectural Museum, Hiroki Watanabe Collection Insect Collection of Yokosuka City Museum Image Database of Fishes in the Kanagawa Prefectural Museum of Natural History Echigo-Matsunoyama Museum of Natural Science, Usuke Shiga butterfly collection Bird specimens of Himeji City Science Museum Ehime University Coleoptera Collection Mollusk Collection of Yokosuka City Museum Crustacea specimens of Toyama Science Museum Fish collection of the Kagoshima University Museum Molluscus specimens of Toyohashi Museum of Natural History Ibaraki Nature Museum, Arthropoda collection Shellfish specimens of the Nishinomiya Shell Museum, Japan Fish Collection of Yokosuka City Museum Fish Collection of Hokkaido University Bryophyte specimens of National Museum of Nature and Science (TNS) Insect specimens of Kashihara City Museum of Insect Fish Specimens of Graduate School of Bioresources Mie University Osaka Prefectural Minoh Park Insects Museum Fish specimen database of Osaka Museum of Natural History Fish collection of National Museum of Nature and Science Bird collection of National Museum of Nature and Science Fish Collection of Natural History Museum and Institute, Chiba Fish Collection of Kanagawa Prefectural Museum of Natural History Mollusca collection, Museum of Natural and Environmental History, Shizuoka Gastropod Specimens of the Yamagata Prefectural Museum Herbarium Specimens of Bonin and Ryukyu Islands The Suguru Igarashi Insect Collection (Lepidoptera: Pieridae) of The University Museum, The University of Tokyo Hemiptera (Homoptera) collection of National Museum of Nature and Science The Masayo Kato Insect Collection (Lepidoptera: Rhopalocera) of The University Museum, The University of Tokyo NIAES Coleoptera Specimen Database Crustacea specimens of Ryukyu University Museum (Fujukan) Protozoa collection of National Museum of Nature and Science Mollusca specimens of Wakayama Prefectural Museum of Natural History JODC Dataset