RRC ID 70218
Author Borgelt J, Sicacha-Parada J, Skarpaas O, Verones F.
Title Native range estimates for red-listed vascular plants.
Journal Sci Data
Abstract Besides being central for understanding both global biodiversity patterns and associated anthropogenic impacts, species range maps are currently only available for a small subset of global biodiversity. Here, we provide a set of assembled spatial data for terrestrial vascular plants listed at the global IUCN red list. The dataset consists of pre-defined native regions for 47,675 species, density of available native occurrence records for 30,906 species, and standardized, large-scale Maxent predictions for 27,208 species, highlighting environmentally suitable areas within species' native regions. The data was generated in an automated approach consisting of data scraping and filtering, variable selection, model calibration and model selection. Generated Maxent predictions were validated by comparing a subset to available expert-drawn range maps from IUCN (n = 4,257), as well as by qualitatively inspecting predictions for randomly selected species. We expect this data to serve as a substitute whenever expert-drawn species range maps are not available for conducting large-scale analyses on biodiversity patterns and associated anthropogenic impacts.
Volume 9(1)
Pages 117
Published 2022-3-29
DOI 10.1038/s41597-022-01233-5
PII 10.1038/s41597-022-01233-5
Description J-OBIS data were referenced. NIES data were referenced. BiodiC-J data were referenced.
PMID 35351917
PMC PMC8964733
MeSH Biodiversity Conservation of Natural Resources Ecosystem Tracheophyta*
IF 5.541
Resource
GBIF JODC Dataset Plant specimens of the Museum of Yamagata University Fern (Pteridophyta) specimens of Toyama Science Museum Plant specimens of Ishikawa Museum of Natural History Plant specimens of Toyota City Nature Sanctuary (from non-museum circle) Pteridophyte specimens of Okinawa Prefectural Museum & Art Museum Plant Specimens of The Cattle Museum Vascular plant specimens of Toyama Science Museum Long-term fauna and flora records of the experimental forests of the Forest Research Station of Hokkaido University, Japan Spermatophyte collection of Himeji City Science Museum A Specimen List of Hymenophyllaceae of Seram and Ambon collected on Indonesian-Japanese botanical expeditions 1983–1986 Plant specimens of Toyota City Nature Sanctuary Plant specimens of Tochigi Prefectural Museum Plant specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Plant specimens of Nasunogahara Museum Ferns and Lycophytes Specimens of Kawasaki Municipal Science Museum Asia-Pacific Dataset Spermatophyta Specimens of Kawasaki Municipal Science Museum Plant Specimen Database of Tama Forest Science Garden, Forestry and Forest Products Research Institute, Japan Marine Biological Sample Database, JAMSTEC Plant specimens of Otaru Museum Plant specimens of Komatsu City Museum Algae collection of Museum of Natural and Environmental History, Shizuoka Flora of Japan Specimen Database Plant specimens of Horaiji-san Museum of Natural History Toji K. collection The 6-7th National Survey on the Natural Environment: Vegetation Survey Vascular Plant Specimens of Yamagata Prefectural Museum Nagoya-Plants Vascular plant specimens of Omachi Alpine Museum Plant specimens of Natural History Museum, Kishiwada City Vascular Plants Specimens of Ehime Prefectural Science Museum Plant Specimens collections of the Kyushu University Museum Vascular Plants Collection of National Museum of Nature and Science Vascular plant specimens of Akita Prefectural Museum Vascular plants database of Atsugi City Museum Herbarium, University Archives and Collections, Fukushima University, Japan (FKSE) Angiospermatatophytina Collection of Saitama Museum of Natural History Gymnospermatatophytina Collection of Saitama Museum of Natural History Vascular plant specimens of Iida City Museum AIS Wildtype Populations of Arabidopsis Plant specimens of Oiso Municipal Museum Herbarium of Hokkaido University Museum (SAPS) Vascular Plant Collection of Natural History Museum and Institute, Chiba Herbarium Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Pteridophyta specimens of Iwate Prefectural Museum Pteridophyta collection of Museum of Natural and Environmental History, Shizuoka Spermatophyta collection of Museum of Natural and Environmental History, Shizuoka Ibaraki Nature Museum, Algae collection Ibaraki Nature Museum, Vascular Plants collection Japan Collection of Microorganisms, RIKEN BioResource Center Macroalgal collection of National Museum of Nature and Science (TNS) Vascular plant specimens of National Museum of Nature and Science (TNS) Plant Specimens of Kurashiki Museum of Natural History Herbarium Specimens of Tokushima Prefectural Museum, Japan Herbarium of Kitakyushu Museum of Natural History and Human History Plant Specimens of Lake Biwa Museum Spermatophyta specimens of Iwate Prefectural Museum Vascular Plants Collection of Sagamihara City Museum Plant specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Plant specimens of Taga Town Museum, Shiga Pref., Japan Plant specimens deposited in Osaka Museum of Natural History, Japan Vascular Plant Specimens of Kochi Prefectural Makino Botanical Garden Plant Specimens of Wakayama Prefectural Museum of Natural History Plant Specimens of The Shimane Nature Museum of Mt. Sanbe Plant specimens of Kiritappu Wetland Center Vascular Plant Specimen database of Kanagawa Prefectural Museum of Natural History Gunma Museum of Natural History, Vascular Plant Specimen Vascular plants collection of Hiratsuka City Museum Plant specimens of Kushiro City Museum Monitoring records of plant species in the Hakone region of Fuji-Hakone-Izu National Park, Japan, 2001-2010 Fossil specimens of Iwate Prefectural Museum Plant specimens of Horaiji-san Museum of Natural History Kichi T. collection Spermatophytes collection of Okinawa Prefectural Museum & Art Museum Fossil Specimens of Ibaraki Nature Museum Fossil Specimens of Komatsu City Museum Plant specimens of Bihoro Museum Microbial Culture Collection, National Institute for Environmental Studies Plant specimens of Mie Prefectural Museum Herbarium Specimens of Bonin and Ryukyu Islands A crowdsourcing approach to collecting photo-based insect and plant observation records Vascular plant specimens of Sugadaira Research Station, Mountain Science Center, University of Tsukuba Occurrence data of woody plants in the Ginkakuzi-san National Forest Herbarium of Shinshu University Plant specimens of Parthenon Tama Museum (PTHM) Plant specimens of Obihiro Centennial City Museum Vascular plant specimens of Nagano Environmental Conservation Research Institute, Nagano Prefecture Plant Observation Records of Japan Botanical Specimens of Kaizuka City Museum of Natural History (KCMN) Tracheophyta collection of Biodiversity Center of Japan, Ministry of the Environment Vascular plant specimens of The Shirakami Research Center for Environmental Sciences, Hirosaki University Vascular plant specimens of Aomori City Forestry Museum Asahikawa Educational College herbarium