Reference - Detail
| RRC ID | 7042 |
|---|---|
| Author | Duangmal K, Mingma R, Thamchaipenet A, Matsumoto A, Takahashi Y. |
| Title | Saccharopolyspora phatthalungensis sp. nov., isolated from rhizosphere soil of Hevea brasiliensis. |
| Journal | Int J Syst Evol Microbiol |
| Abstract |
The taxonomic position of a rhizosphere soil isolate, designated strain SR8.15T, was determined by using a polyphasic approach. Phylogenetic analysis based on an almost-complete 16S rRNA gene sequence of the strain showed that it formed a well-separated sub-branch within the radiation encompassing the genus Saccharopolyspora. Highest levels of 16S rRNA gene sequence similarity were found between strain SR8.15T and Saccharopolyspora shandongensis CGMCC 4.3530T (98.9%) and Saccharopolyspora spinosa DSM 44228T (98.5%). However, these strains shared low levels of DNA-DNA relatedness (<26%). Strain SR8.15T had chemical characteristics consistent with its classification in the genus Saccharopolyspora. It contained meso-diaminopimelic acid as the diagnostic diamino acid. Whole-cell hydrolysates contained arabinose and galactose. The diagnostic phospholipids were phosphatidylcholine, phosphatidylglycerol and phosphatidylinositol. The main menaquinone was MK-9(H4). No mycolic acid was detected. The predominant cellular fatty acid was iso-C16:0. The G+C content of the genomic DNA of strain SR8.15T was 70.3 mol%. Strain SR8.15T had a phenotypic profile that readily distinguished it from recognized representatives of the genus Saccharopolyspora. It is evident from its combined genotypic and phenotypic properties that strain SR8.15T represents a novel species of the genus Saccharopolyspora, for which the name Saccharopolyspora phatthalungensis sp. nov. is proposed. The type strain is SR8.15T (=TISTR 1921T=BCC 35844T=NRRL B-24798T). |
| Volume | 60(Pt 8) |
| Pages | 1904-1908 |
| Published | 2010-8-1 |
| DOI | 10.1099/ijs.0.018275-0 |
| PMID | 19783611 |
| MeSH | DNA, Bacterial / genetics DNA, Ribosomal / genetics Fatty Acids / metabolism Hevea / microbiology* Molecular Sequence Data Phylogeny Plant Roots / microbiology RNA, Ribosomal, 16S / genetics Saccharopolyspora / classification* Saccharopolyspora / genetics Saccharopolyspora / isolation & purification* Saccharopolyspora / metabolism Soil Microbiology* |
| IF | 2.415 |
| Times Cited | 10 |
| WOS Category | MICROBIOLOGY |
| Altmetric score |
オルトメトリクス指標項目
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| The most frequently cited source | Wikipedia |
| Total number of mentions | 1 |
| Altmetric score changes over past 6months | 0.0 |
| Resource | |
| General Microbes | JCM 14614 JCM 9375 |