RRC ID 72055
Author Zhao Z, Xiao N, Shen M, Li J.
Title Comparison between optimized MaxEnt and random forest modeling in predicting potential distribution: A case study with Quasipaa boulengeri in China.
Journal Sci Total Environ
Abstract Random forest (RF) and MaxEnt models are shallow machine learning approaches that perform well in predicting species' potential distributions. RF models can produce robust results with the default automatic configuration in most cases, but it is necessary for MaxEnt to optimize the model settings to improve the performance, and the predictive performance difference between optimized MaxEnt and RF is uncertain. To explore this issue, the potential distribution of the endangered amphibian Quasipaa boulengeri in China was predicted using optimized MaxEnt and RF models. A total of 408 occurrence data were selected, 1000 locations were generated as pseudo-absence data by the geographic distance method, and 10,000 sites were selected as background data by creating a bias file. Partial ROC at different thresholds and success rate curves were used to compare the predictive performances between optimized MaxEnt and RF. Our results showed that the RF and optimized MaxEnt models both had good performance in predicting the potential distribution of Q. boulengeri, with the RF model performing slightly better whether based on partial ROC or success rate curves. Furthermore, the core suitable habitat regions of Q. boulengeri identified by RF and MaxEnt were similar and were all located in the Sichuan, Chongqing, Hubei, Hunan, and Guizhou provinces. However, the RF model produced a habitat suitability map with higher discrimination and greater heterogeneity. Temperature annual range, mean temperature of the driest quarter, and annual precipitation were the vital environmental variables limiting the distribution of Q. boulengeri. The RF model is the stronger machine learner. We believe it may be more applicable in predicting the native potential distributions of species with sufficient occurrence data, given the additional predictive detail, the simplicity of use, the computational time involved, and the operational complexity.
Volume 842
Pages 156867
Published 2022-6-22
DOI 10.1016/j.scitotenv.2022.156867
PII S0048-9697(22)03964-X
Description J-OBIS data were referenced.
PMID 35752245
MeSH Animals Anura* China Ecosystem* Temperature
IF 6.551
Resource
GBIF Zoological specimens of Gifu Prefectural Museum Neuroptera collection of National Museum of Nature and Science Molluscan specimen database of Kanagawa Prefectural Museum of Natural History Mammal specimen database of Kanagawa Prefectural Museum of Natural History Gunma Museum of Natural History, Insect Specimen Gunma Museum of Natural History, Molluscan Specimen Crustacean specimen database of Kanagawa Prefectural Museum of Natural History Fungi specimen database of Kanagawa Prefectural Museum of Natural History Fungal Specimens of National Museum of Nature and Science (TNS) Insecta collection of Museum of Natural and Environmental History, Shizuoka Mollusca specimens of Ryukyu University Museum (Fujukan) Mollusca collection of National Museum of Nature and Science Insect specimens of Nasunogahara Museum Mollusca specimens of Okinawa Prefectural Museum & Art Museum The Myriapoda Collection of the National Museum of Nature and Science Insect specimens of Himeji City Science Museum Other Arachnida collection of National Museum of Nature and Science Bird specimens of Okinawa Prefectural Museum & Art Museum Odonata collection of National Museum of Nature and Science The Araneae Collection of the National Museum of Nature and Science Insect specimens of Iwate Prefectural Museum Asia-Pacific Dataset Genebank, National Institute of Agrobiological Sciences Hymenoptera specimen database of Kyushu University The Suguru Igarashi Insect Collection (Lepidoptera: Lycaenidae) of The University Museum, The University of Tokyo Mollusca specimens of Manazuru Shell Museum Aschelminth collection of National Museum of Nature and Science Mollusca specimens of Natural History Museum, Kishiwada City Coleoptera collection of National Museum of Nature and Science Insect specimens of Hokkaido University Plant Specimen Database of Tama Forest Science Garden, Forestry and Forest Products Research Institute, Japan The Shigeru Eda Insect Collection of The University Museum, The University of Tokyo Insect specimen database of Kanagawa Prefectural Museum of Natural History Crustacean collection of the National Museum of Nature and Science Hemiptera (Heteroptera) collection of National Museum of Nature and Science Annelida collection of National Museum of Nature and Science Kyushu University Museum Coleoptera Collection The Suguru Igarashi Insect Collection (Lepidoptera: Papilionidae) of The University Museum, The University of Tokyo Biological Resource Center, Department of Biotechnology, National Institute of Technology and Evaluation Birds collection of Abiko City Museum of Birds Bird specimens of the Yamashina Institute for Ornithology Flora of Japan Specimen Database Crustacea specimens of Wakayama Prefectural Museum of Natural History Entomological Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Lepidoptera collection of National Museum of Nature and Science Platyhelminth collection of National Museum of Nature and Science The Suguru Igarashi Insect Collection (Lepidoptera: Hesperiidae) of The University Museum, The University of Tokyo Mollusca specimens of Toyama Science Museum Bird Specimens in the Museum of Nature and Human Activities, Hyogo, Japan Crustacean specimens of Kitakyushu Museum of Natural History & Human History Plant Specimens collections of the Kyushu University Museum Marine Invertebrata specimen database of Osaka Museum of Natutal History Hymenoptera collection of National Museum of Nature and Science Lepidoptera specimen database of Japan Crustacea Collection of Natural History Museum and Institute, Chiba Marine Invertebrata specimens deposited in the Fukui City Museum of Natural History, Japan Insect Collection of Yokosuka City Museum Bird specimens of Bihoro Museum Image Database of Fishes in the Kanagawa Prefectural Museum of Natural History Echigo-Matsunoyama Museum of Natural Science, Usuke Shiga butterfly collection Bird specimens of Himeji City Science Museum Ehime University Coleoptera Collection Molluscan specimens of Bihoro Museum Birds Specimens of Akita Prefectural Museum Crustacea specimens of Toyama Science Museum Herbarium Specimens of Bonin and Ryukyu Islands Fish collection of the Kagoshima University Museum Ibaraki Nature Museum, Arthropoda collection Ibaraki Nature Museum, Mammals collection The Suguru Igarashi Insect Collection (Lepidoptera: Pieridae) of The University Museum, The University of Tokyo Ibaraki Nature Museum, Birds collection A crowdsourcing approach to collecting photo-based insect and plant observation records Shellfish specimens of the Nishinomiya Shell Museum, Japan Hemiptera (Homoptera) collection of National Museum of Nature and Science Ibaraki Nature Museum, Vascular Plants collection The Masayo Kato Insect Collection (Lepidoptera: Rhopalocera) of The University Museum, The University of Tokyo Fish Collection of Hokkaido University Hokkaido University Coleoptera Collection Bryophyte specimens of National Museum of Nature and Science (TNS) Insect specimens of Kashihara City Museum of Insect NIAES Coleoptera Specimen Database Fish Specimens of Graduate School of Bioresources Mie University Crustacea specimens of Ryukyu University Museum (Fujukan) Osaka Prefectural Minoh Park Insects Museum Fish specimen database of Osaka Museum of Natural History Protozoa collection of National Museum of Nature and Science Fish collection of National Museum of Nature and Science Mollusca specimens of Wakayama Prefectural Museum of Natural History Bird collection of National Museum of Nature and Science Freshwater Fish Specimens of Lake Biwa Museum Fish Collection of Natural History Museum and Institute, Chiba Spermatophyta specimens of Iwate Prefectural Museum Rust fungus specimen of Research Group of Plant Parasitic Mycology, Faculty of Life and Environmental Sciences, University of Tsukuba Fish Collection of Kanagawa Prefectural Museum of Natural History JODC Dataset Plant specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Kyoto University Reptile Collection Insect specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Araneidae specimen database of Osaka Museum of Natural History Arthropoda (excepting insect) collection of Osaka Museum of Natural History Invertebrate (minor phyla) collection of Osaka Museum of Natural History Molluscan collection of Osaka Museum of Natural History Plant specimens deposited in Osaka Museum of Natural History, Japan Insect collection of Itami City Museum of Insects Vascular Plant Specimens of Kochi Prefectural Makino Botanical Garden Plant Specimens of Wakayama Prefectural Museum of Natural History