RRC ID 72097
著者 Hanno Seebens, Ekin Kaplan
タイトル DASCO: A workflow to downscale alien species checklists using occurrence records and to re-allocate species distributions across realms
ジャーナル NeoBiota
Abstract Information about occurrences of alien species is often provided in so-called checklists, which represents lists of reported alien species in a region. In many cases, available checklists cover whole countries, which is too coarse for many analyses and limits capabilities of assessing status and trends of biological invasions. Information about point-wise occurrences is available in large quantities at online facilities such as GBIF and OBIS, which, however, do not provide information about the invasion status of individual populations. To close this gap, we here provide a semi-automated workflow called DASCO to downscale regional checklists using occurrence records obtained from GBIF and OBIS. Within the workflow, coordinate-based occurrence records for species listed in the provided regional checklists are obtained from GBIF and OBIS, and the status of being an alien population is assigned using the information in the provided checklists. In this way, information in checklists is made available at the local scale, which can then be re-allocated to any other spatial categorisation as provided by the user. In addition, habitats of species are determined to distinguish between marine, brackish, terrestrial, and freshwater species, which allows splitting the provided checklists to the respective realms and ecoregions. By using checklists of global databases, we showcase the usage of the DASCO workflow and revealed > 35 million occurrence records of alien populations in terrestrial and marine regions worldwide, which were back-transformed to terrestrial and marine regions for comparison. DASCO has the potential to be used as a basis for the widely applied species distribution models or assessments of status and trends of biological invasions at large geographic scales. The workflow is implemented in R and in full compliance with the FAIR data principles of open science.
巻・号 74
ページ 75-91
公開日 2022-6-17
DOI 10.3897/neobiota.74.81082
IF 2.643
リソース情報
GBIF Fern (Pteridophyta) specimens of Toyama Science Museum Butterfly Specimens of Yamaguchi Prefectural Yamaguchi Museum Chironomid Specimen records in the Chironomid DNA Barcode Database. Insect Specimens of Ibaraki University (Faculty of Science) Plant specimens of Ishikawa Museum of Natural History Crabs from Vietnam and Indonesia Mollusca collection of National Museum of Nature and Science Bryophyte specimens of Kanagawa Prefectural Museum of Natural History Fungi specimens of Saitama Museum of Natural History Bryophyte Specimens of Ishikawa Museum of Natural History (ISKW) Plant Specimens of The Cattle Museum Long-term fauna and flora records of the experimental forests of the Forest Research Station of Hokkaido University, Japan Spermatophyte collection of Himeji City Science Museum CMarZ (Census of Marine Zooplankton)-Asia Database Plant Specimen Database of Tama Forest Science Garden, Forestry and Forest Products Research Institute, Japan Plant specimens of Toyota City Nature Sanctuary Ferns and Lycophytes Specimens of Kawasaki Municipal Science Museum Shallow-water fauna of Sagami Bay Insect specimens of Otaru Museum Insect specimens of Kaizuka City Museum of Natural History Insect specimens of Rikuzen-Takata City Museum Insect specimens of Iwate Prefectural Museum Insect specimens of Toyota City Nature Sanctuary Survey data of algal beds on the Monitoring sites 1000 project, BDCJ Mammal specimens of Oiso Municipal Museum Asia-Pacific Dataset Migratory shorebirds (sandpipers and plovers) in Hokkaido Bird specimens of Kawasaki Municipal Science Museum Insect specimens of Obihiro Centennial City Museum Marine Biological Sample Database, JAMSTEC Spermatophyta Specimens of Kawasaki Municipal Science Museum Plant specimens of Otaru Museum Project for Reef Fish Monitoring Kelp Dataset Specimen based records and geographic locations of carabid beetles (Coleoptera) collected mainly by Dr. Kazuo Tanaka Crustacean collection of the National Museum of Nature and Science Reptile specimens of Yamagata Prefectural Museum Annelida collection of National Museum of Nature and Science Survey data of seagrass beds on the Monitoring sites 1000 project, BDCJ Plant specimens of Komatsu City Museum Nagoya-Mammals Araneae Specimens of Kawasaki Municipal Science Museum Insect specimens of Yonezawa Insectarium Mollusca specimens of Oiso Municipal Museum Flora of Japan Specimen Database Cetacean Stranding Data in Hokkaido The 6-7th National Survey on the Natural Environment: Vegetation Survey Bee occurrence data collected in "Hanamaru-Maruhana national census (Bumble bee national census)" in Japan JAMSTEC_MULTISPLASH2006_SagamiBay_Siphonophora Occurrence data of seagrasses in Southeast Asia extracted from literature Mammal assemblages recorded by camera traps inside and outside the evacuation zone of the Fukushima Daiichi Nuclear Power Plant accident Herbaceous and arboreous plants list on the Komaba Campus of University of Tokyo, Japan Sipuncula collection of National Museum of Nature and Science Vascular Plant Specimens of Yamagata Prefectural Museum Bird specimens of Obihiro Centennial City Museum Ogasawara DNA barcode database Entomological Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Insect specimens of Sagamihara City Museum Gunma Museum of Natural History, Bryophyta Specimen Vascular plant specimens of Omachi Alpine Museum Fish specimens of Toyama Science Museum Monitoring Sites 1000 Satoyama Mammals Lepidoptera collection of National Museum of Nature and Science Platyhelminth collection of National Museum of Nature and Science Lichen specimens of Saitama Museum of Natural History Spider specimens of Kushiro City Museum Mammal specimens of Obihiro Centennial City Museum Acoustic monitoring data of avian species inside and outside the evacuation zone of the Fukushima Daiichi power plant accident Mollusca specimens of Toyama Science Museum Bird Specimens in the Museum of Nature and Human Activities, Hyogo, Japan Crustacean specimens of Kitakyushu Museum of Natural History & Human History Insect specimens of Kushiro City Museum Marine Invertebrata specimen database of Osaka Museum of Natutal History Fish monitoring data in Lake Kasumigaura Echinoderm specimens of Ryukyu University Museum (Fujukan) Vascular Plants Collection of National Museum of Nature and Science Odonata Specimens of Yamaguchi prefectural Yamaguchi Museum Gunma Museum of Natural History, Crustacea Specimens Bryophyte specimens of Iwate Prefectural Museum Vascular plant specimens of Akita Prefectural Museum Akita Prefectural Museum, Insect Collection Herbarium of Shinshu University Crustacea Collection of Natural History Museum and Institute, Chiba Insect Specimens Deposited in Saga Prefectural Space and Science Museum, JAPAN Plant specimens of Parthenon Tama Museum (PTHM) Akita Prefectural Museum, Hiroki Watanabe Collection Herbarium, University Archives and Collections, Fukushima University, Japan (FKSE) Plant specimens of Obihiro Centennial City Museum Angiospermatatophytina Collection of Saitama Museum of Natural History Insect Collection of Yokosuka City Museum Vascular plant specimens of Nagano Environmental Conservation Research Institute, Nagano Prefecture Echigo-Matsunoyama Museum of Natural Science, Usuke Shiga butterfly collection Scleractinia specimens of Kuroshio Biological Research Foundation Bird Specimens of The Cattle Museum AIS Wildtype Populations of Arabidopsis Plankton&BenthosResearch Specimens of Class Pycnogonida of Akita Prefectural Museum Insect specimens of Oiso Municipal Museum Specimens of Class Maxillopoda of Akita Prefectural Museum Plant specimens of Oiso Municipal Museum Mollusk Collection of Yokosuka City Museum Plant Observation Records of Japan Fungal Collection of Natural History Museum and Institute, Chiba Reptiles Specimens of Akita Prefectural Museum Mammal specimens of Saitama Museum of Natural History Millipedes Specimens of Akita Prefectural Museum Crustacea specimens of Kuroshio Biological Research Foundation Hymenoptera Specimens of Yamaguchi prefectural Yamaguchi Museum Birds Specimens of Akita Prefectural Museum Mollusca specimens of Kuroshio Biological Research Foundation Fungal specimens of Komatsu City Museum Herbarium of Hokkaido University Museum (SAPS) Ascidians Specimens of Akita Prefectural Museum Mollusca specimens of Wakayama Prefectural Museum of Natural History Vascular plant specimens of The Shirakami Research Center for Environmental Sciences, Hirosaki University Mollusc specimens of Parthenon Tama Museum (PTHM) Diptera Specimens of Yamaguchi prefectural Yamaguchi Museum Fish collection of the Kagoshima University Museum Echinoderms Specimens of Akita Prefectural Museum Bryophyte Collection of Natural History Museum and Institute, Chiba JODC Dataset Actinopterygius Specimens of Akita Prefectural Museum Amphibians Specimens of Akita Prefectural Museum Ground Beetle of Japan Specimen Database Mammal specimens of Toyota City Nature Sanctuary Plant specimens of Toyota City Nature Sanctuary (from non-museum circle) Vascular Plant Collection of Natural History Museum and Institute, Chiba Echinodermata specimens of Kuroshio Biological Research Foundation Bryophytes specimens of Akita Prefectural Museum Brown algae specimens of Komatsu City Museum Herbarium Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Insect Collection of Saitama Museum of Natural History Mycological Collection of Osaka Museum of Natural History Mammalians Specimens of Akita Prefectural Museum Malacostracans Specimens of Akita Prefectural Museum Vascular plant specimens of Toyama Science Museum Observation records of Amphibians Pteridophyta specimens of Iwate Prefectural Museum Insect specimens of Komatsu City Museum Molluscus specimens of Toyohashi Museum of Natural History Ibaraki Nature Museum, Arthropoda collection Insect specimens of Toyama Science Museum Ibaraki Nature Museum, Mollusk collection Ibaraki Nature Museum, Mammals collection Kyoto University Reptile Collection Ibaraki Nature Museum, Fish collection Ibaraki Nature Museum, Birds collection Ibaraki Nature Museum, Bryophyta collection Ibaraki Nature Museum, Amphibians and Reptiles collection Ibaraki Nature Museum, Fungi collection Ibaraki Nature Museum, Algae collection Shellfish specimens of the Nishinomiya Shell Museum, Japan Fish collection of the Museum of Nature and Human Activities, Hyogo Akita Prefectural Museum, Observation Records of Birds in Akita Prefecture Ibaraki Nature Museum, Vascular Plants collection Kitami Region Museum of Science History and Art(KIRM) Fish Collection of Yokosuka City Museum Fish Collection of Hokkaido University Bryophyte specimens of National Museum of Nature and Science (TNS) Vascular plant specimens of National Museum of Nature and Science (TNS) Insect specimens of Kashihara City Museum of Insect Plant Specimens of Kurashiki Museum of Natural History Herbarium Specimens of Tokushima Prefectural Museum, Japan Insect specimens of Omogo Mountain Museum Fish Specimens of Graduate School of Bioresources Mie University Bryophyte specimens database of Mr. Tsutomu Kodama collection Fish specimen database of Osaka Museum of Natural History Hymenopteran specimen database of Osaka Museum of Natural History Fish collection of National Museum of Nature and Science Fish Collection of Natural History Museum and Institute, Chiba Spermatophyta specimens of Iwate Prefectural Museum Rust fungus specimen of Research Group of Plant Parasitic Mycology, Faculty of Life and Environmental Sciences, University of Tsukuba Vascular Plants Collection of Sagamihara City Museum Plant specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Coleoptera specimen database of Osaka Museum of Natural History Lepidoptera specimen database of Osaka Museum of Natural History Insects specimen database of Osaka Museum of Natural History Arthropoda (excepting insect) collection of Osaka Museum of Natural History Amphibian specimens of Toyama Science Museum Plant specimens deposited in Osaka Museum of Natural History, Japan Insect collection of Itami City Museum of Insects Vascular Plant Specimens of Kochi Prefectural Makino Botanical Garden Zoological specimens of Gifu Prefectural Museum Plant specimens of Kiritappu Wetland Center Fungal specimens of Faculty of Agriculture and Life Science, Hirosaki University Diversity and community structure of pelagic cnidarians in south-east Asian tropical marginal Seas Underwater video and still-image dataset of fishes and other aquatic animals in Lake Biwa, Japan, observed via carp-mounted video loggers. Gunma Museum of Natural History, Arachnid Specimens Insecta Specimens of Kawasaki Municipal Science Museum Mammal specimens of Komatsu City Museum Mammal specimens of Kawasaki Municipal Science Museum Coastal Ecosystem Monitoring in the Tsugaru strait side of Shimokita Vascular Plant Specimen database of Kanagawa Prefectural Museum of Natural History Orthoptera collection of Hiratsuka City Museum Gunma Museum of Natural History, Vascular Plant Specimen Gunma Museum of Natural History, Fungi Specimen Gunma Museum of Natural History, Insect Specimen Gunma Museum of Natural History, Molluscan Specimen Gunma Museum of Natural History, Fish Specimen Gunma Museum of Natural History, Amphibia and Reptile Specimen Gunma Museum of Natural History, Mammal Specimen Insect Collection of Natural History Museum and Institute, Chiba Fungi specimen database of Kanagawa Prefectural Museum of Natural History Fungal Specimens of National Museum of Nature and Science (TNS) Vascular plants collection of Hiratsuka City Museum Insecta collection of Museum of Natural and Environmental History, Shizuoka Plant specimens of Kushiro City Museum Bird specimens of Komatsu City Museum Acoustic monitoring data of anuran species inside and outside the evacuation zone of the Fukushima Daiichi power plant accident Mammal Specimens of The Cattle Museum Annual Census on Waterfowl (Anatidae) Population Coleoptera Specimens of Yamaguchi prefectural Yamaguchi Museum Survey data of tidal flats on the Monitoring sites 1000 project, BDCJ Lepidopterous specimens of Yamagata Prefectural Museum Monitoring Sites 1000 Satoyama Birds Mollusca specimens of Manazuru Shell Museum Fish Collection of Coastal Branch of Natural History Museum and Institute, Chiba Insect specimens of Tokushima Prefectural Museum Bird specimens of Toyota City Nature Sanctuary Insect specimens of Hokkaido University Hymenoptera collection of National Museum of Nature and Science Bryophyte specimens of Toyota City Nature Sanctuary (TCNS). Microbial Culture Collection, National Institute for Environmental Studies Plant specimens of Mie Prefectural Museum Bird specimens of Oiso Municipal Museum Herbarium Specimens of Bonin and Ryukyu Islands A crowdsourcing approach to collecting photo-based insect and plant observation records FRA-PLANKTON DATASET Hokkaido University Coleoptera Collection Vascular plant specimens of Sugadaira Research Station, Mountain Science Center, University of Tsukuba NIAES Coleoptera Specimen Database Bryophyte specimens of Toyama Science Museum Occurrence data of woody plants in the Ginkakuzi-san National Forest Gunma Museum of Natural History, Invertebrate fossil Specimen Specimen-based records of geometrid, pyralid, and crambid moths (Lepidoptera) with location information from the collection of Dr. Hiroshi Inoue Crustacea specimens of Ryukyu University Museum (Fujukan) Fixed Point Survey for Shorebirds of the family Scolopacidae and Charadriidae Bird specimens of Saitama Museum of Natural History