RRC ID 72118
著者 Pelletier TA, Parsons DJ, Decker SK, Crouch S, Franz E, Ohrstrom J, Carstens BC.
タイトル phylogatR: Phylogeographic data aggregation and repurposing.
ジャーナル Mol Ecol Resour
Abstract Patterns of genetic diversity within species contain information the history of that species, including how they have responded to historical climate change and how easily the organism is able to disperse across its habitat. More than 40,000 phylogeographic and population genetic investigations have been published to date, each collecting genetic data from hundreds of samples. Despite these millions of data points, meta-analyses are challenging because the synthesis of results across hundreds of studies, each using different methods and forms of analysis, is a daunting and time-consuming task. It is more efficient to proceed by repurposing existing data and using automated data analysis. To facilitate data repurposing, we created a database (phylogatR) that aggregates data from different sources and conducts automated multiple sequence alignments and data curation to provide users with nearly ready-to-analyse sets of data for thousands of species. Two types of scientific research will be made easier by phylogatR: large meta-analyses of thousands of species that can address classic questions in evolutionary biology and ecology, and student- or citizen- science based investigations that will introduce a broad range of people to the analysis of genetic data. phylogatR enhances the value of existing data via the creation of software and web-based tools that enable these data to be recycled and reanalysed and increase accessibility to big data for research laboratories and classroom instructors with limited computational expertise and resources.
巻・号 22(8)
ページ 2830-2842
公開日 2022-11-1
DOI 10.1111/1755-0998.13673
PMID 35748425
PMC PMC9796472
MeSH Data Aggregation* Ecology* / methods Ecosystem Humans Phylogeography Software
IF 6.286
リソース情報
GBIF Hemichordata collection of National Museum of Nature and Science Fern (Pteridophyta) specimens of Toyama Science Museum Insect specimens of Natural History Museum, Kishiwada City Butterfly Specimens of Yamaguchi Prefectural Yamaguchi Museum Chironomid Specimen records in the Chironomid DNA Barcode Database. Insect Specimens of the Yamagata Prefectural Museum Insect specimens of Bihoro Museum Insect Specimens of Ibaraki University (Faculty of Science) Bird specimens of Natural History Museum, Kishiwada City Plant specimens of Ishikawa Museum of Natural History Crustacean Specimens of the Yamagata Prefectural Museum Mollusca collection of National Museum of Nature and Science Mollusca specimens of Okinawa Prefectural Museum & Art Museum Pteridophyte specimens of Okinawa Prefectural Museum & Art Museum Ascidian Specimens of the Yamagata Prefectural Museum Insect Specimens of Gunma Insect World Bryophyte specimens of Kanagawa Prefectural Museum of Natural History Fungi specimens of Saitama Museum of Natural History Cnidaria specimens of Ryukyu University Museum (Fujukan) Bryophyte Specimens of Ishikawa Museum of Natural History (ISKW) Insect specimens of Himeji City Science Museum Plant Specimens of The Cattle Museum Long-term fauna and flora records of the experimental forests of the Forest Research Station of Hokkaido University, Japan Spermatophyte collection of Himeji City Science Museum CMarZ (Census of Marine Zooplankton)-Asia Database Fish Specimens of the Yamagata Prefectural Museum Bird specimens of Okinawa Prefectural Museum & Art Museum Plant specimens of Toyota City Nature Sanctuary Plant specimens of Tochigi Prefectural Museum Mammal specimens of Okinawa Prefectural Museum & Art Museum The Araneae Collection of the National Museum of Nature and Science RIKEN BioResource Center, Experimental Animal Division Echinoderm specimens of Ryukyu University Museum (Fujukan) Vascular Plants Collection of National Museum of Nature and Science Odonata Specimens of Yamaguchi prefectural Yamaguchi Museum Sakurai Insect Specimens Collection of Tamarokuto Science Center Insect specimens of Mie Prefectural Museum Fossil specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Plant specimens of Nasunogahara Museum Gunma Museum of Natural History, Crustacea Specimens Brachiopoda Specimens of the Yamagata Prefectural Museum Ferns and Lycophytes Specimens of Kawasaki Municipal Science Museum Fossil specimens of Toyama Science Museum Shallow-water fauna of Sagami Bay Lepidoptera specimen database of Japan Kinorhyncha specimens of Ryukyu University Museum (Fujukan) Insect specimens of Otaru Museum Insect specimens of Kaizuka City Museum of Natural History Fish specimens of Bihoro Museum Bryophyte specimens of Iwate Prefectural Museum Reptile specimens of Kanagawa Prefectural Museum of Natural History Vascular plant specimens of Akita Prefectural Museum Insect specimens of Rikuzen-Takata City Museum Insect specimens of Iwate Prefectural Museum Akita Prefectural Museum, Insect Collection Crustacea Collection of Natural History Museum and Institute, Chiba The Acari Collection of the National Museum of Nature and Science Marine Invertebrata specimens deposited in the Fukui City Museum of Natural History, Japan A nest-site survey of Barn swallow at railroad stations in the Kinki District,south-central Japan Insect Specimens Deposited in Saga Prefectural Space and Science Museum, JAPAN Insect specimens of Toyota City Nature Sanctuary Apterygota Collection of Saitama Museum of Natural History Mollusca Collection of Saitama Museum of Natural History Vascular plants database of Atsugi City Museum Akita Prefectural Museum, Hiroki Watanabe Collection Herbarium, University Archives and Collections, Fukushima University, Japan (FKSE) Bryophytes specimens of Okinawa Prefectural Museum & Art Museum Survey data of algal beds on the Monitoring sites 1000 project, BDCJ Angiospermatatophytina Collection of Saitama Museum of Natural History Gymnospermatatophytina Collection of Saitama Museum of Natural History Asia-Pacific Dataset Bryophyta Collection of Saitama Museum of Natural History Hymenoptera specimen database of Kyushu University Bird Collection of Yokosuka City Museum Echinoderm collection of National Museum of Nature and Science Insect Collection of Yokosuka City Museum Image Database of Fishes in the Kanagawa Prefectural Museum of Natural History The Suguru Igarashi Insect Collection (Lepidoptera: Lycaenidae) of The University Museum, The University of Tokyo Bird specimens of Kawasaki Municipal Science Museum Echigo-Matsunoyama Museum of Natural Science, Usuke Shiga butterfly collection Bird specimens of Himeji City Science Museum Spermatophyta Specimens of Kawasaki Municipal Science Museum Vascular plant specimens of Iida City Museum Algae specimens of Ryukyu University Museum (Fujukan) Scleractinia specimens of Kuroshio Biological Research Foundation Xiphosuran collection of the National Museum of Nature and Science Gorgonacea specimens of Kuroshio Biological Research Foundation Bird Specimens of The Cattle Museum Aschelminth collection of National Museum of Nature and Science AIS Wildtype Populations of Arabidopsis Ehime University Coleoptera Collection Flatworm specimens of Ryukyu University Museum (Fujukan) Molluscan specimens of Bihoro Museum Sponge collection of National Museum of Nature and Science Plankton&BenthosResearch Bird specimens of Tochigi Prefectural Museum Specimens of Class Pycnogonida of Akita Prefectural Museum Insect specimens of Oiso Municipal Museum Specimens of Class Maxillopoda of Akita Prefectural Museum Plant specimens of Oiso Municipal Museum Mollusk Collection of Yokosuka City Museum Bryozoans Specimens of Akita Prefectural Museum The Masayo Kato Insect Collection (Hymenoptera) of The University Museum, The University of Tokyo Fungal Collection of Natural History Museum and Institute, Chiba Insect species recorded in sugarcane fields of Khon Kaen Province, Thailand, over three seasons in 2012 Brachiopods Specimens of Akita Prefectural Museum Specimens of Phylum Nemertea of Akita Prefectural Museum Sipuncula collection of National Museum of Nature and Science Invertebrate specimens (except for arthropods and mollusca) of Natural History Museum, Kishiwada City Reptiles Specimens of Akita Prefectural Museum Gunma Museum of Natural History, Bryophyta Specimen Invertebrate specimens of Toyama Science Museum Echinodermata Specimens of the Yamagata Prefectural Museum Millipedes Specimens of Akita Prefectural Museum Amphibian specimens of Obihiro Centennial City Museum Cnidarians Specimens of Akita Prefectural Museum Specimens of Phylum Porifera of Akita Prefectural Museum Plant Specimen Database of Tama Forest Science Garden, Forestry and Forest Products Research Institute, Japan Crustacea specimens of Kuroshio Biological Research Foundation Araneae collection of Kanagawa Prefectural Museum of Natural History Birds Specimens of Akita Prefectural Museum Arthropoda specimens of Toyama Science Museum Pycnogonidea specimens of Kuroshio Biological Research Foundation Hagfishes Specimens of Akita Prefectural Museum Mollusca specimens of Kuroshio Biological Research Foundation Herbarium of Hokkaido University Museum (SAPS) Cephalaspidomorphs Specimens of Akita Prefectural Museum Mammal specimens of Oiso Municipal Museum Crustacea specimens of Toyama Science Museum Ascidians Specimens of Akita Prefectural Museum Migratory shorebirds (sandpipers and plovers) in Hokkaido Fish collection of the Kagoshima University Museum Insect specimens of Obihiro Centennial City Museum Echinoderms Specimens of Akita Prefectural Museum Bryophyte Collection of Natural History Museum and Institute, Chiba Marine Biological Sample Database, JAMSTEC Actinopterygius Specimens of Akita Prefectural Museum Ascidiacea specimens of Ryukyu University Museum (Fujukan) Amphibians Specimens of Akita Prefectural Museum Vascular Plant Collection of Natural History Museum and Institute, Chiba Plant specimens of Otaru Museum Centipedes Specimens of Akita Prefectural Museum Project for Reef Fish Monitoring Echinodermata specimens of Kuroshio Biological Research Foundation Echiurans Specimens of Akita Prefectural Museum The Shigeru Eda Insect Collection of The University Museum, The University of Tokyo Bryophytes specimens of Akita Prefectural Museum Specimen based records and geographic locations of carabid beetles (Coleoptera) collected mainly by Dr. Kazuo Tanaka Bryophyte Collection of Museum of Natural and Environmental History, Shizuoka Herbarium Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Insect specimen database of Kanagawa Prefectural Museum of Natural History Arthropod specimens of Natural History Museum, Kishiwada City Insect Collection of Saitama Museum of Natural History Mammalians Specimens of Akita Prefectural Museum Marine specimens of Misaki Marine Biological Station, Graduate School of Science, The University of Tokyo Malacostracans Specimens of Akita Prefectural Museum Observation records of Amphibians Annelids Specimens of Akita Prefectural Museum Pteridophyta specimens of Iwate Prefectural Museum Pteridophyta collection of Museum of Natural and Environmental History, Shizuoka Chondrichthyans Specimens of Akita Prefectural Museum Herpetological specimens of Okinawa Prefectural Museum & Art Museum Molluscus specimens of Toyohashi Museum of Natural History Ibaraki Nature Museum, Arthropoda collection Crustacean collection of the National Museum of Nature and Science Ibaraki Nature Museum, Mollusk collection Hemiptera (Heteroptera) collection of National Museum of Nature and Science Spermatophyta collection of Museum of Natural and Environmental History, Shizuoka Amphibian Specimens of the Yamagata Prefectural Museum Reptile specimens of Yamagata Prefectural Museum Cnidarian Specimens of the Yamagata Prefectural Museum Annelida collection of National Museum of Nature and Science Ibaraki Nature Museum, Mammals collection Captive Primate Specimens of Japan Monkey Centre Ibaraki Nature Museum, Fish collection Ibaraki Nature Museum, Birds collection Tardigrad collection of the National Museum of Nature and Science Plant specimens of Komatsu City Museum Ibaraki Nature Museum, Bryophyta collection Ibaraki Nature Museum, Amphibians and Reptiles collection Nagoya-Mammals Ibaraki Nature Museum, Fungi collection Ibaraki Nature Museum, Algae collection Ibaraki Nature Museum, Lichen collection Shellfish specimens of the Nishinomiya Shell Museum, Japan Fish collection of the Museum of Nature and Human Activities, Hyogo Benthos collection of the Museum of Nature and Human Activities, Hyogo Akita Prefectural Museum, Observation Records of Birds in Akita Prefecture Ibaraki Nature Museum, Vascular Plants collection Kyushu University Museum Coleoptera Collection Japan Collection of Microorganisms, RIKEN BioResource Center The Suguru Igarashi Insect Collection (Lepidoptera: Papilionidae) of The University Museum, The University of Tokyo Fish Collection of Yokosuka City Museum Fish Collection of Hokkaido University Tertiary vertebrate collection at Osama Museum of Natural History Lichen specimens of National Museum of Nature and Science (TNS) Insect specimens of Sugadaira Montane Research Center, University of Tsukuba Bryophyte specimens of National Museum of Nature and Science (TNS) Macroalgal collection of National Museum of Nature and Science (TNS) Annelid Specimens of the Yamagata Prefectural Museum Insect specimens of Yonezawa Insectarium Vascular plant specimens of National Museum of Nature and Science (TNS) Myxomycete specimens of National Museum of Nature and Science (TNS) Arachnid specimens of Okinawa Prefectural Museum & Art Museum Insect specimens of Kashihara City Museum of Insect Amphibian specimens of Kanagawa Prefectural Museum of Natural History Plant Specimens of Kurashiki Museum of Natural History Herbarium Specimens of Tokushima Prefectural Museum, Japan Type Collection of the Seto Marine Biological Laboratory, Kyoto University Fish Specimens of Tokushima Prefectural Museum, Japan Insect Specimen Database of Fukui City Museum of Natural History Insect specimens of Omogo Mountain Museum Fish Specimens of Graduate School of Bioresources Mie University Osaka Prefectural Minoh Park Insects Museum Herbarium of Kitakyushu Museum of Natural History and Human History Bryophyte specimens database of Mr. Tsutomu Kodama collection Fish specimen database of Osaka Museum of Natural History Hymenopteran specimen database of Osaka Museum of Natural History Fish collection of National Museum of Nature and Science Bird collection of National Museum of Nature and Science Invertebrate collection of the Seto Marine Biological Laboratory, Kyoto University Mammal collection of National Museum of Nature and Science Mollusca Collection of the Seto Marine Biological Laboratory, Kyoto University Freshwater Fish Specimens of Lake Biwa Museum Biological Resource Center, Department of Biotechnology, National Institute of Technology and Evaluation Fish Collection of Natural History Museum and Institute, Chiba Plant Specimens of Lake Biwa Museum Arthropoda Collection of the Seto Marine Biological Laboratory, Kyoto University Spermatophyta specimens of Iwate Prefectural Museum Cnidaria Collection of the Seto Marine Biological Laboratory, Kyoto University Seaweed (Plantae) Collection of the Seto Marine Biological Laboratory, Kyoto University Bacteria Collection of the Seto Marine Biological Laboratory, Kyoto University Chromista Collection of the Seto Marine Biological Laboratory, Kyoto University Birds collection of Abiko City Museum of Birds Rust fungus specimen of Research Group of Plant Parasitic Mycology, Faculty of Life and Environmental Sciences, University of Tsukuba Mollusca Collection of Natural History Museum and Institute, Chiba Herpetological collection of National Museum of Nature and Science Bird specimens of the Yamashina Institute for Ornithology Fish Collection of Kanagawa Prefectural Museum of Natural History Crustacean specimens of Bihoro Museum Vascular Plants Collection of Sagamihara City Museum Fungi specimens of Kawasaki Municipal Science Museum Mollusca collection, Museum of Natural and Environmental History, Shizuoka Plant specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Insect specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Freshwater Fish specimens of Taga Town Museum, Shiga Pref., Japan Freshwater shellfish specimens of Taga Town Museum, Shiga Pref., Japan Mammals specimens of Taga Town Museum, Shiga Pref., Japan Mollusca specimens of Oiso Municipal Museum Insect specimens of Taga Town Museum, Shiga Pref., Japan Algae collection of Museum of Natural and Environmental History, Shizuoka Plant specimens of Taga Town Museum, Shiga Pref., Japan Insect Specimens of Lake Biwa Museum Nemertean specimens of Ryukyu University Museum (Fujukan) Coleoptera specimen database of Osaka Museum of Natural History Flora of Japan Specimen Database Lepidoptera specimen database of Osaka Museum of Natural History Insects specimen database of Osaka Museum of Natural History Bryophyte specimens of Nagano Environmental Conservation Research Institute, Nagano Prefecture Araneidae specimen database of Osaka Museum of Natural History Avian Specimens of the Yamagata Prefectural Museum Arthropoda (excepting insect) collection of Osaka Museum of Natural History Amphibian specimens of Toyama Science Museum Insect specimens of Okinawa Prefectural Museum & Art Museum Invertebrate (minor phyla) collection of Osaka Museum of Natural History Plant specimens of Horaiji-san Museum of Natural History Toji K. collection Molluscan collection of Osaka Museum of Natural History Mammalian Specimens of the Yamagata Prefectural Museum Plant specimens deposited in Osaka Museum of Natural History, Japan Insect collection of Itami City Museum of Insects The 6-7th National Survey on the Natural Environment: Vegetation Survey Vascular Plant Specimens of Kochi Prefectural Makino Botanical Garden Plant Specimens of Wakayama Prefectural Museum of Natural History Zoological specimens of Gifu Prefectural Museum Plant Specimens of The Shimane Nature Museum of Mt. Sanbe Bryophyte specimens of The Nagoya University Museum Shellfish specimens of Miyazaki Prefecture Museum of Nature and History Bird specimens of Miyazaki Prefecture Museum of Nature and History JAMSTEC_MULTISPLASH2006_SagamiBay_Siphonophora Pycnogonid collection of the National Museum of Nature and Science Plant specimens of Kiritappu Wetland Center Diptera collection of National Museum of Nature and Science Neuroptera collection of National Museum of Nature and Science Mammal assemblages recorded by camera traps inside and outside the evacuation zone of the Fukushima Daiichi Nuclear Power Plant accident Fungal specimens of Faculty of Agriculture and Life Science, Hirosaki University Diversity and community structure of pelagic cnidarians in south-east Asian tropical marginal Seas Lancelet specimens of Ryukyu University Museum (Fujukan) Underwater video and still-image dataset of fishes and other aquatic animals in Lake Biwa, Japan, observed via carp-mounted video loggers. Vascular Plant Specimens of Yamagata Prefectural Museum Gunma Museum of Natural History, Arachnid Specimens Nagoya-Plants Lichen specimens of Okinawa Prefectural Museum & Art Museum Mammal specimens of Ryukyu University Museum (Fujukan) Crustacea specimens of Wakayama Prefectural Museum of Natural History Insecta Specimens of Kawasaki Municipal Science Museum NIAES microbial inventory, "microForce" microbe collection, Tsukuba, National Institute for Agro-Environmental Sciences, Japan Mammal specimens of Komatsu City Museum Reptile specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Mammal specimens of Kawasaki Municipal Science Museum Molluscan specimens of Kaizuka City Museum of Natural History Bird specimens of Obihiro Centennial City Museum Mammal specimens of Natural History Museum, Kishiwada City Coastal Ecosystem Monitoring in the Tsugaru strait side of Shimokita Insect specimens of Ryukyu University Museum (Fujukan) Vascular Plant Specimen database of Kanagawa Prefectural Museum of Natural History Molluscan specimen database of Kanagawa Prefectural Museum of Natural History Mammal specimen database of Kanagawa Prefectural Museum of Natural History Orthoptera collection of Hiratsuka City Museum Insect specimen database of Atsugi City Museum Entomological Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Gunma Museum of Natural History, Vascular Plant Specimen Gunma Museum of Natural History, Fungi Specimen Insect specimens of Sagamihara City Museum Gunma Museum of Natural History, Insect Specimen Vascular plant specimens of Omachi Alpine Museum Gunma Museum of Natural History, Molluscan Specimen Monitoring Sites 1000 Satoyama Mammals Lepidoptera collection of National Museum of Nature and Science Gunma Museum of Natural History, Fish Specimen Gunma Museum of Natural History, Amphibia and Reptile Specimen Platyhelminth collection of National Museum of Nature and Science Gunma Museum of Natural History, Mammal Specimen Bird specimens of Kushiro City Museum Insect Collection of Natural History Museum and Institute, Chiba Insects Specimens of Kagoshima Prefectural Museum Crustacean specimen database of Kanagawa Prefectural Museum of Natural History Myriapod Specimens of the Yamagata Prefectural Museum Fungi specimen database of Kanagawa Prefectural Museum of Natural History Bird specimen database of Kanagawa Prefectural Museum of Natural History Lichen specimens of Saitama Museum of Natural History Fungal Specimens of National Museum of Nature and Science (TNS) Vascular plants collection of Hiratsuka City Museum Insecta collection of Museum of Natural and Environmental History, Shizuoka Annelida specimens of Ryukyu University Museum (Fujukan) Plant specimens of Kushiro City Museum Dry specimens of Recent Mollusca in the Department of Historical Geology and Paleontology, The University Museum, The University of Tokyo (UMUT) Mollusca specimens of Ryukyu University Museum (Fujukan) Bird specimens of Komatsu City Museum Spider specimens of Kushiro City Museum Insect specimens of Nasunogahara Museum Mammal specimens of Obihiro Centennial City Museum Algae specimens of Kanagawa Prefectural Museum of Natural History Fish specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Acoustic monitoring data of avian species inside and outside the evacuation zone of the Fukushima Daiichi power plant accident Acoustic monitoring data of anuran species inside and outside the evacuation zone of the Fukushima Daiichi power plant accident Psocodea (Mallophaga) collection of National Museum of Nature and Science Monitoring records of plant species in the Hakone region of Fuji-Hakone-Izu National Park, Japan, 2001-2010 Sipunculan Specimens of the Yamagata Prefectural Museum Mammal specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Fossil specimens of Iwate Prefectural Museum Bryozoa Specimens of the Yamagata Prefectural Museum Survey data of rocky shores on the Monitoring sites 1000 project, BDCJ The Suguru Igarashi Insect Collection (Lepidoptera: Hesperiidae) of The University Museum, The University of Tokyo The Keiichi Omoto Butterfly Collection(Papilionidae), The University Museum, The University of Tokyo Plant specimens of Horaiji-san Museum of Natural History Kichi T. collection Mollusca specimens of Toyama Science Museum Protochordata collection of National Museum of Nature and Science Fish specimens of Natural History Museum, Kishiwada City NODAI Culture Collection Center, Tokyo University of Agriculture, Japan Annual Census on Waterfowl (Anatidae) Population Coleoptera Specimens of Yamaguchi prefectural Yamaguchi Museum The Myriapoda Collection of the National Museum of Nature and Science Fish specimens of Okinawa Prefectural Museum & Art Museum Spermatophytes collection of Okinawa Prefectural Museum & Art Museum Survey data of tidal flats on the Monitoring sites 1000 project, BDCJ Other Arachnida collection of National Museum of Nature and Science Plant specimens of Natural History Museum, Kishiwada City Odonata collection of National Museum of Nature and Science Fossil Specimens of Ibaraki Nature Museum Bird Specimens in the Museum of Nature and Human Activities, Hyogo, Japan Invertebrate specimens in the Wakayama Prefectural Museum of Natural History, Japan. Tentaculata collection of National Museum of Nature and Science Pogonophoran collection of the National Museum of Nature and Science Insect specimens of Natural Museum of Geihoku Lepidopterous specimens of Yamagata Prefectural Museum Monitoring Sites 1000 Satoyama Birds Vascular Plants Specimens of Ehime Prefectural Science Museum Genebank, National Institute of Agrobiological Sciences Crustacean specimens of Kitakyushu Museum of Natural History & Human History Mollusca specimens of Manazuru Shell Museum Fossil Specimens of Komatsu City Museum Plant Specimens collections of the Kyushu University Museum Mollusca specimens of Natural History Museum, Kishiwada City Vertebrate specimens of Kumamoto City Museum Amphibian specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Insect specimens of Kushiro City Museum Herpetological (amphibian & reptile) specimens of Ryukyu University Museum (Fujukan) Coleoptera collection of National Museum of Nature and Science Marine Invertebrata specimen database of Osaka Museum of Natutal History Fish Collection of Coastal Branch of Natural History Museum and Institute, Chiba Insect specimens of Tokushima Prefectural Museum Bird specimens of Toyota City Nature Sanctuary Insect specimens of Hokkaido University Hymenoptera collection of National Museum of Nature and Science Gastropod Specimens of the Yamagata Prefectural Museum Kamptozoa collection of National Museum of Nature and Science Fish monitoring data in Lake Kasumigaura Bird specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Plant specimens of Bihoro Museum Bird specimens of Bihoro Museum Fish specimens of Kaizuka City Museum of Natural History Chaetognatha collection of National Museum of Nature and Science The Kojiro Shiraishi Insect Collection of The University Museum, The University of Tokyo Microbial Culture Collection, National Institute for Environmental Studies Chromistal specimens of Kanagawa Prefectural Museum of Natural History Plant specimens of Mie Prefectural Museum Crustacea specimens of Okinawa Prefectural Museum & Art Museum Bird specimens of Oiso Municipal Museum Herbarium Specimens of Bonin and Ryukyu Islands Insect specimens of Tochigi Prefectural Museum The Suguru Igarashi Insect Collection (Lepidoptera: Pieridae) of The University Museum, The University of Tokyo A crowdsourcing approach to collecting photo-based insect and plant observation records Hemiptera (Homoptera) collection of National Museum of Nature and Science Fish specimens of Ryukyu University Museum (Fujukan) The Masayo Kato Insect Collection (Lepidoptera: Rhopalocera) of The University Museum, The University of Tokyo The Insect Collection of Prof. Chûjirô Sasaki and associated researchers, The University Museum, The University of Tokyo. Hokkaido University Coleoptera Collection Vascular plant specimens of Sugadaira Research Station, Mountain Science Center, University of Tsukuba NIAES Coleoptera Specimen Database The Masao Oita Insect Collection of The University Museum, The University of Tokyo Lichen specimen database of Faurie collection Bryophyte specimens of Toyama Science Museum Occurrence data of woody plants in the Ginkakuzi-san National Forest Specimen-based records of geometrid, pyralid, and crambid moths (Lepidoptera) with location information from the collection of Dr. Hiroshi Inoue Crustacea specimens of Ryukyu University Museum (Fujukan) Fixed Point Survey for Shorebirds of the family Scolopacidae and Charadriidae Porifera Specimens of the Yamagata Prefectural Museum Bird specimens of Saitama Museum of Natural History Fish specimens of Toyama Science Museum Herbarium of Shinshu University Plant specimens of Parthenon Tama Museum (PTHM) Plant specimens of Obihiro Centennial City Museum Vascular plant specimens of Nagano Environmental Conservation Research Institute, Nagano Prefecture The Yasunori Kishida Insect Collection (Coleoptera: Disteniidae and Cerambycidae) of The University Museum, The University of Tokyo Plant Observation Records of Japan Bird specimens of Ryukyu University Museum (Fujukan) Mammal specimens of Saitama Museum of Natural History Botanical Specimens of Kaizuka City Museum of Natural History (KCMN) Protozoa collection of National Museum of Nature and Science Insect collection of Biodiversity Center of Japan, Ministry of the Environment Hymenoptera Specimens of Yamaguchi prefectural Yamaguchi Museum Tracheophyta collection of Biodiversity Center of Japan, Ministry of the Environment Fungal specimens of Komatsu City Museum Arachnid specimens of Ryukyu University Museum (Fujukan) Microfossil collection of National Museum of Nature and Science Mollusca specimens of Wakayama Prefectural Museum of Natural History Vascular plant specimens of The Shirakami Research Center for Environmental Sciences, Hirosaki University Diptera Specimens of Yamaguchi prefectural Yamaguchi Museum Hemiptera Specimens of Yamaguchi prefectural Yamaguchi Museum Vascular plant specimens of Aomori City Forestry Museum Asahikawa Educational College herbarium JODC Dataset Ground Beetle of Japan Specimen Database Mammal specimens of Toyota City Nature Sanctuary Plant specimens of the Museum of Yamagata University Plant specimens of Toyota City Nature Sanctuary (from non-museum circle) Brown algae specimens of Komatsu City Museum Vascular plant specimens of Toyama Science Museum Crustacean specimens of Kaizuka City Museum of Natural History Insect specimens of Komatsu City Museum A Specimen List of Hymenophyllaceae of Seram and Ambon collected on Indonesian-Japanese botanical expeditions 1983–1986 Insect specimens of Toyama Science Museum Specimen records of spiders (Arachnida: Araneae) by monthly census for 3 years in forest areas of Yakushima Island, Japan Plant specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Coelenterata (Cnidaria and Ctenophora) collection of National Museum of Nature and Science Mesozoa collection of National Museum of Nature and Science Kyoto University Reptile Collection