RRC ID 72118
著者 Pelletier TA, Parsons DJ, Decker SK, Crouch S, Franz E, Ohrstrom J, Carstens BC.
タイトル phylogatR: Phylogeographic data aggregation and repurposing.
ジャーナル Mol Ecol Resour
Abstract Patterns of genetic diversity within species contain information the history of that species, including how they have responded to historical climate change and how easily the organism is able to disperse across its habitat. More than 40,000 phylogeographic and population genetic investigations have been published to date, each collecting genetic data from hundreds of samples. Despite these millions of data points, meta-analyses are challenging because the synthesis of results across hundreds of studies, each using different methods and forms of analysis, is a daunting and time-consuming task. It is more efficient to proceed by repurposing existing data and using automated data analysis. To facilitate data repurposing, we created a database (phylogatR) that aggregates data from different sources and conducts automated multiple sequence alignments and data curation to provide users with nearly ready-to-analyse sets of data for thousands of species. Two types of scientific research will be made easier by phylogatR: large meta-analyses of thousands of species that can address classic questions in evolutionary biology and ecology, and student- or citizen- science based investigations that will introduce a broad range of people to the analysis of genetic data. phylogatR enhances the value of existing data via the creation of software and web-based tools that enable these data to be recycled and reanalysed and increase accessibility to big data for research laboratories and classroom instructors with limited computational expertise and resources.
巻・号 22(8)
ページ 2830-2842
公開日 2022-6-24
DOI 10.1111/1755-0998.13673
解説 J-OBIS data were referenced. NIES data were referenced. BiodiC-J data were referenced.
PMID 35748425
PMC PMC9796472
MeSH Data Aggregation* Ecology* / methods Ecosystem Humans Phylogeography Software
IF 6.286
リソース情報
GBIF The 6-7th National Survey on the Natural Environment: Vegetation Survey JAMSTEC_MULTISPLASH2006_SagamiBay_Siphonophora Diptera collection of National Museum of Nature and Science Mammal assemblages recorded by camera traps inside and outside the evacuation zone of the Fukushima Daiichi Nuclear Power Plant accident Lancelet specimens of Ryukyu University Museum (Fujukan) Vascular Plant Specimens of Yamagata Prefectural Museum Nagoya-Plants Lichen specimens of Okinawa Prefectural Museum & Art Museum Hemichordata collection of National Museum of Nature and Science Mammal specimens of Ryukyu University Museum (Fujukan) Fern (Pteridophyta) specimens of Toyama Science Museum Crustacea specimens of Wakayama Prefectural Museum of Natural History Insect specimens of Natural History Museum, Kishiwada City Butterfly Specimens of Yamaguchi Prefectural Yamaguchi Museum NIAES microbial inventory, "microForce" microbe collection, Tsukuba, National Institute for Agro-Environmental Sciences, Japan Chironomid Specimen records in the Chironomid DNA Barcode Database. Reptile specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Insect Specimens of the Yamagata Prefectural Museum Insect specimens of Bihoro Museum Bird specimens of Obihiro Centennial City Museum Insect Specimens of Ibaraki University (Faculty of Science) Entomological Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Bird specimens of Natural History Museum, Kishiwada City Plant specimens of Ishikawa Museum of Natural History Insect specimens of Sagamihara City Museum Crustacean Specimens of the Yamagata Prefectural Museum Vascular plant specimens of Omachi Alpine Museum Mollusca collection of National Museum of Nature and Science Mollusca specimens of Okinawa Prefectural Museum & Art Museum Monitoring Sites 1000 Satoyama Mammals Pteridophyte specimens of Okinawa Prefectural Museum & Art Museum Ascidian Specimens of the Yamagata Prefectural Museum Insect Specimens of Gunma Insect World Bryophyte specimens of Kanagawa Prefectural Museum of Natural History Fungi specimens of Saitama Museum of Natural History Cnidaria specimens of Ryukyu University Museum (Fujukan) Bryophyte Specimens of Ishikawa Museum of Natural History (ISKW) Insect specimens of Himeji City Science Museum Plant Specimens of The Cattle Museum Long-term fauna and flora records of the experimental forests of the Forest Research Station of Hokkaido University, Japan Spermatophyte collection of Himeji City Science Museum Lepidoptera collection of National Museum of Nature and Science Platyhelminth collection of National Museum of Nature and Science Bird specimens of Kushiro City Museum Insects Specimens of Kagoshima Prefectural Museum Myriapod Specimens of the Yamagata Prefectural Museum Lichen specimens of Saitama Museum of Natural History CMarZ (Census of Marine Zooplankton)-Asia Database Spider specimens of Kushiro City Museum Fish Specimens of the Yamagata Prefectural Museum Mammal specimens of Obihiro Centennial City Museum Bird specimens of Okinawa Prefectural Museum & Art Museum Plant specimens of Toyota City Nature Sanctuary Acoustic monitoring data of avian species inside and outside the evacuation zone of the Fukushima Daiichi power plant accident Plant specimens of Tochigi Prefectural Museum Mammal specimens of Okinawa Prefectural Museum & Art Museum The Araneae Collection of the National Museum of Nature and Science Psocodea (Mallophaga) collection of National Museum of Nature and Science Plant specimens of Nasunogahara Museum Ferns and Lycophytes Specimens of Kawasaki Municipal Science Museum Shallow-water fauna of Sagami Bay Kinorhyncha specimens of Ryukyu University Museum (Fujukan) Insect specimens of Otaru Museum Insect specimens of Kaizuka City Museum of Natural History Fish specimens of Bihoro Museum Sipunculan Specimens of the Yamagata Prefectural Museum Bryozoa Specimens of the Yamagata Prefectural Museum Survey data of rocky shores on the Monitoring sites 1000 project, BDCJ The Suguru Igarashi Insect Collection (Lepidoptera: Hesperiidae) of The University Museum, The University of Tokyo The Keiichi Omoto Butterfly Collection(Papilionidae), The University Museum, The University of Tokyo Mollusca specimens of Toyama Science Museum Fish specimens of Natural History Museum, Kishiwada City Plant specimens of Natural History Museum, Kishiwada City Bird Specimens in the Museum of Nature and Human Activities, Hyogo, Japan Reptile specimens of Kanagawa Prefectural Museum of Natural History Invertebrate specimens in the Wakayama Prefectural Museum of Natural History, Japan. Insect specimens of Rikuzen-Takata City Museum Insect specimens of Iwate Prefectural Museum Insect specimens of Natural Museum of Geihoku The Acari Collection of the National Museum of Nature and Science Vascular Plants Specimens of Ehime Prefectural Science Museum A nest-site survey of Barn swallow at railroad stations in the Kinki District,south-central Japan Insect specimens of Toyota City Nature Sanctuary Crustacean specimens of Kitakyushu Museum of Natural History & Human History Survey data of algal beds on the Monitoring sites 1000 project, BDCJ Plant Specimens collections of the Kyushu University Museum Asia-Pacific Dataset Hymenoptera specimen database of Kyushu University Vertebrate specimens of Kumamoto City Museum Echinoderm collection of National Museum of Nature and Science Insect specimens of Kushiro City Museum The Suguru Igarashi Insect Collection (Lepidoptera: Lycaenidae) of The University Museum, The University of Tokyo Bird specimens of Kawasaki Municipal Science Museum Spermatophyta Specimens of Kawasaki Municipal Science Museum Algae specimens of Ryukyu University Museum (Fujukan) Xiphosuran collection of the National Museum of Nature and Science Aschelminth collection of National Museum of Nature and Science The Masayo Kato Insect Collection (Hymenoptera) of The University Museum, The University of Tokyo Insect species recorded in sugarcane fields of Khon Kaen Province, Thailand, over three seasons in 2012 Sipuncula collection of National Museum of Nature and Science Invertebrate specimens (except for arthropods and mollusca) of Natural History Museum, Kishiwada City Gunma Museum of Natural History, Bryophyta Specimen Marine Invertebrata specimen database of Osaka Museum of Natutal History Echinodermata Specimens of the Yamagata Prefectural Museum Amphibian specimens of Obihiro Centennial City Museum Plant Specimen Database of Tama Forest Science Garden, Forestry and Forest Products Research Institute, Japan Araneae collection of Kanagawa Prefectural Museum of Natural History Fish monitoring data in Lake Kasumigaura RIKEN BioResource Center, Experimental Animal Division Echinoderm specimens of Ryukyu University Museum (Fujukan) Vascular Plants Collection of National Museum of Nature and Science Mammal specimens of Oiso Municipal Museum Odonata Specimens of Yamaguchi prefectural Yamaguchi Museum Migratory shorebirds (sandpipers and plovers) in Hokkaido Insect specimens of Obihiro Centennial City Museum Sakurai Insect Specimens Collection of Tamarokuto Science Center Marine Biological Sample Database, JAMSTEC Ascidiacea specimens of Ryukyu University Museum (Fujukan) Insect specimens of Mie Prefectural Museum Plant specimens of Otaru Museum Project for Reef Fish Monitoring The Shigeru Eda Insect Collection of The University Museum, The University of Tokyo Specimen based records and geographic locations of carabid beetles (Coleoptera) collected mainly by Dr. Kazuo Tanaka Insect specimen database of Kanagawa Prefectural Museum of Natural History Arthropod specimens of Natural History Museum, Kishiwada City Herpetological specimens of Okinawa Prefectural Museum & Art Museum Crustacean collection of the National Museum of Nature and Science Fossil specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Hemiptera (Heteroptera) collection of National Museum of Nature and Science Amphibian Specimens of the Yamagata Prefectural Museum Reptile specimens of Yamagata Prefectural Museum Gunma Museum of Natural History, Crustacea Specimens Cnidarian Specimens of the Yamagata Prefectural Museum Brachiopoda Specimens of the Yamagata Prefectural Museum Annelida collection of National Museum of Nature and Science Captive Primate Specimens of Japan Monkey Centre Fossil specimens of Toyama Science Museum Tardigrad collection of the National Museum of Nature and Science Lepidoptera specimen database of Japan Plant specimens of Komatsu City Museum Nagoya-Mammals Bryophyte specimens of Iwate Prefectural Museum Kyushu University Museum Coleoptera Collection Vascular plant specimens of Akita Prefectural Museum The Suguru Igarashi Insect Collection (Lepidoptera: Papilionidae) of The University Museum, The University of Tokyo Tertiary vertebrate collection at Osama Museum of Natural History Akita Prefectural Museum, Insect Collection Insect specimens of Sugadaira Montane Research Center, University of Tsukuba Annelid Specimens of the Yamagata Prefectural Museum Crustacea Collection of Natural History Museum and Institute, Chiba Insect specimens of Yonezawa Insectarium Arachnid specimens of Okinawa Prefectural Museum & Art Museum Amphibian specimens of Kanagawa Prefectural Museum of Natural History Type Collection of the Seto Marine Biological Laboratory, Kyoto University Invertebrate collection of the Seto Marine Biological Laboratory, Kyoto University Mollusca Collection of the Seto Marine Biological Laboratory, Kyoto University Biological Resource Center, Department of Biotechnology, National Institute of Technology and Evaluation Arthropoda Collection of the Seto Marine Biological Laboratory, Kyoto University Cnidaria Collection of the Seto Marine Biological Laboratory, Kyoto University Marine Invertebrata specimens deposited in the Fukui City Museum of Natural History, Japan Seaweed (Plantae) Collection of the Seto Marine Biological Laboratory, Kyoto University Bacteria Collection of the Seto Marine Biological Laboratory, Kyoto University Insect Specimens Deposited in Saga Prefectural Space and Science Museum, JAPAN Apterygota Collection of Saitama Museum of Natural History Chromista Collection of the Seto Marine Biological Laboratory, Kyoto University Mollusca Collection of Saitama Museum of Natural History Birds collection of Abiko City Museum of Birds Mollusca Collection of Natural History Museum and Institute, Chiba Bird specimens of the Yamashina Institute for Ornithology Crustacean specimens of Bihoro Museum Vascular plants database of Atsugi City Museum Mollusca specimens of Oiso Municipal Museum Akita Prefectural Museum, Hiroki Watanabe Collection Algae collection of Museum of Natural and Environmental History, Shizuoka Nemertean specimens of Ryukyu University Museum (Fujukan) Herbarium, University Archives and Collections, Fukushima University, Japan (FKSE) Flora of Japan Specimen Database Bryophyte specimens of Nagano Environmental Conservation Research Institute, Nagano Prefecture Bryophytes specimens of Okinawa Prefectural Museum & Art Museum Avian Specimens of the Yamagata Prefectural Museum Insect specimens of Okinawa Prefectural Museum & Art Museum Plant specimens of Horaiji-san Museum of Natural History Toji K. collection Mammalian Specimens of the Yamagata Prefectural Museum Angiospermatatophytina Collection of Saitama Museum of Natural History Gymnospermatatophytina Collection of Saitama Museum of Natural History Bryophyta Collection of Saitama Museum of Natural History Bird Collection of Yokosuka City Museum Insect Collection of Yokosuka City Museum Image Database of Fishes in the Kanagawa Prefectural Museum of Natural History Echigo-Matsunoyama Museum of Natural Science, Usuke Shiga butterfly collection Bird specimens of Himeji City Science Museum Vascular plant specimens of Iida City Museum Freshwater shellfish specimens of Taga Town Museum, Shiga Pref., Japan Scleractinia specimens of Kuroshio Biological Research Foundation Mammals specimens of Taga Town Museum, Shiga Pref., Japan Gorgonacea specimens of Kuroshio Biological Research Foundation Insect specimens of Taga Town Museum, Shiga Pref., Japan Plant specimens of Taga Town Museum, Shiga Pref., Japan Bird Specimens of The Cattle Museum Insect Specimens of Lake Biwa Museum AIS Wildtype Populations of Arabidopsis Coleoptera specimen database of Osaka Museum of Natural History Lepidoptera specimen database of Osaka Museum of Natural History Ehime University Coleoptera Collection Insects specimen database of Osaka Museum of Natural History Flatworm specimens of Ryukyu University Museum (Fujukan) Araneidae specimen database of Osaka Museum of Natural History Arthropoda (excepting insect) collection of Osaka Museum of Natural History Molluscan specimens of Bihoro Museum Amphibian specimens of Toyama Science Museum Invertebrate (minor phyla) collection of Osaka Museum of Natural History Molluscan collection of Osaka Museum of Natural History Plant specimens deposited in Osaka Museum of Natural History, Japan Insect collection of Itami City Museum of Insects Vascular Plant Specimens of Kochi Prefectural Makino Botanical Garden Plant Specimens of Wakayama Prefectural Museum of Natural History Sponge collection of National Museum of Nature and Science Plankton&BenthosResearch Zoological specimens of Gifu Prefectural Museum Bird specimens of Tochigi Prefectural Museum Plant Specimens of The Shimane Nature Museum of Mt. Sanbe Specimens of Class Pycnogonida of Akita Prefectural Museum Bryophyte specimens of The Nagoya University Museum Insect specimens of Oiso Municipal Museum Shellfish specimens of Miyazaki Prefecture Museum of Nature and History Bird specimens of Miyazaki Prefecture Museum of Nature and History Pycnogonid collection of the National Museum of Nature and Science Specimens of Class Maxillopoda of Akita Prefectural Museum Plant specimens of Kiritappu Wetland Center Plant specimens of Oiso Municipal Museum Neuroptera collection of National Museum of Nature and Science Fungal specimens of Faculty of Agriculture and Life Science, Hirosaki University Mollusk Collection of Yokosuka City Museum Diversity and community structure of pelagic cnidarians in south-east Asian tropical marginal Seas Bryozoans Specimens of Akita Prefectural Museum Underwater video and still-image dataset of fishes and other aquatic animals in Lake Biwa, Japan, observed via carp-mounted video loggers. Gunma Museum of Natural History, Arachnid Specimens Fungal Collection of Natural History Museum and Institute, Chiba Insecta Specimens of Kawasaki Municipal Science Museum Mammal specimens of Komatsu City Museum Mammal specimens of Kawasaki Municipal Science Museum Molluscan specimens of Kaizuka City Museum of Natural History Mammal specimens of Natural History Museum, Kishiwada City Coastal Ecosystem Monitoring in the Tsugaru strait side of Shimokita Brachiopods Specimens of Akita Prefectural Museum Specimens of Phylum Nemertea of Akita Prefectural Museum Insect specimens of Ryukyu University Museum (Fujukan) Vascular Plant Specimen database of Kanagawa Prefectural Museum of Natural History Reptiles Specimens of Akita Prefectural Museum Molluscan specimen database of Kanagawa Prefectural Museum of Natural History Mammal specimen database of Kanagawa Prefectural Museum of Natural History Invertebrate specimens of Toyama Science Museum Orthoptera collection of Hiratsuka City Museum Insect specimen database of Atsugi City Museum Millipedes Specimens of Akita Prefectural Museum Gunma Museum of Natural History, Vascular Plant Specimen Cnidarians Specimens of Akita Prefectural Museum Gunma Museum of Natural History, Fungi Specimen Gunma Museum of Natural History, Insect Specimen Specimens of Phylum Porifera of Akita Prefectural Museum Gunma Museum of Natural History, Molluscan Specimen Gunma Museum of Natural History, Fish Specimen Crustacea specimens of Kuroshio Biological Research Foundation Gunma Museum of Natural History, Amphibia and Reptile Specimen Birds Specimens of Akita Prefectural Museum Gunma Museum of Natural History, Mammal Specimen Insect Collection of Natural History Museum and Institute, Chiba Arthropoda specimens of Toyama Science Museum Crustacean specimen database of Kanagawa Prefectural Museum of Natural History Pycnogonidea specimens of Kuroshio Biological Research Foundation Fungi specimen database of Kanagawa Prefectural Museum of Natural History Bird specimen database of Kanagawa Prefectural Museum of Natural History Fungal Specimens of National Museum of Nature and Science (TNS) Vascular plants collection of Hiratsuka City Museum Insecta collection of Museum of Natural and Environmental History, Shizuoka Annelida specimens of Ryukyu University Museum (Fujukan) Plant specimens of Kushiro City Museum Dry specimens of Recent Mollusca in the Department of Historical Geology and Paleontology, The University Museum, The University of Tokyo (UMUT) Mollusca specimens of Ryukyu University Museum (Fujukan) Hagfishes Specimens of Akita Prefectural Museum Bird specimens of Komatsu City Museum Insect specimens of Nasunogahara Museum Mollusca specimens of Kuroshio Biological Research Foundation Algae specimens of Kanagawa Prefectural Museum of Natural History Fish specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Herbarium of Hokkaido University Museum (SAPS) Acoustic monitoring data of anuran species inside and outside the evacuation zone of the Fukushima Daiichi power plant accident Monitoring records of plant species in the Hakone region of Fuji-Hakone-Izu National Park, Japan, 2001-2010 Cephalaspidomorphs Specimens of Akita Prefectural Museum Mammal specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Crustacea specimens of Toyama Science Museum Fossil specimens of Iwate Prefectural Museum Plant specimens of Horaiji-san Museum of Natural History Kichi T. collection Ascidians Specimens of Akita Prefectural Museum Protochordata collection of National Museum of Nature and Science Fish collection of the Kagoshima University Museum NODAI Culture Collection Center, Tokyo University of Agriculture, Japan Annual Census on Waterfowl (Anatidae) Population Echinoderms Specimens of Akita Prefectural Museum Coleoptera Specimens of Yamaguchi prefectural Yamaguchi Museum The Myriapoda Collection of the National Museum of Nature and Science Fish specimens of Okinawa Prefectural Museum & Art Museum Spermatophytes collection of Okinawa Prefectural Museum & Art Museum Survey data of tidal flats on the Monitoring sites 1000 project, BDCJ Bryophyte Collection of Natural History Museum and Institute, Chiba Other Arachnida collection of National Museum of Nature and Science Odonata collection of National Museum of Nature and Science Actinopterygius Specimens of Akita Prefectural Museum Fossil Specimens of Ibaraki Nature Museum Amphibians Specimens of Akita Prefectural Museum Tentaculata collection of National Museum of Nature and Science Pogonophoran collection of the National Museum of Nature and Science Vascular Plant Collection of Natural History Museum and Institute, Chiba Lepidopterous specimens of Yamagata Prefectural Museum Monitoring Sites 1000 Satoyama Birds Centipedes Specimens of Akita Prefectural Museum Genebank, National Institute of Agrobiological Sciences Mollusca specimens of Manazuru Shell Museum Echinodermata specimens of Kuroshio Biological Research Foundation Fossil Specimens of Komatsu City Museum Echiurans Specimens of Akita Prefectural Museum Mollusca specimens of Natural History Museum, Kishiwada City Amphibian specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Bryophytes specimens of Akita Prefectural Museum Herpetological (amphibian & reptile) specimens of Ryukyu University Museum (Fujukan) Coleoptera collection of National Museum of Nature and Science Bryophyte Collection of Museum of Natural and Environmental History, Shizuoka Fish Collection of Coastal Branch of Natural History Museum and Institute, Chiba Herbarium Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Insect specimens of Tokushima Prefectural Museum Bird specimens of Toyota City Nature Sanctuary Insect specimens of Hokkaido University Hymenoptera collection of National Museum of Nature and Science Gastropod Specimens of the Yamagata Prefectural Museum Kamptozoa collection of National Museum of Nature and Science Bird specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Plant specimens of Bihoro Museum Bird specimens of Bihoro Museum Insect Collection of Saitama Museum of Natural History Fish specimens of Kaizuka City Museum of Natural History Chaetognatha collection of National Museum of Nature and Science Mammalians Specimens of Akita Prefectural Museum The Kojiro Shiraishi Insect Collection of The University Museum, The University of Tokyo Marine specimens of Misaki Marine Biological Station, Graduate School of Science, The University of Tokyo Microbial Culture Collection, National Institute for Environmental Studies Chromistal specimens of Kanagawa Prefectural Museum of Natural History Malacostracans Specimens of Akita Prefectural Museum Plant specimens of Mie Prefectural Museum Crustacea specimens of Okinawa Prefectural Museum & Art Museum Observation records of Amphibians Bird specimens of Oiso Municipal Museum Annelids Specimens of Akita Prefectural Museum Herbarium Specimens of Bonin and Ryukyu Islands Insect specimens of Tochigi Prefectural Museum Pteridophyta specimens of Iwate Prefectural Museum The Suguru Igarashi Insect Collection (Lepidoptera: Pieridae) of The University Museum, The University of Tokyo Pteridophyta collection of Museum of Natural and Environmental History, Shizuoka Chondrichthyans Specimens of Akita Prefectural Museum Molluscus specimens of Toyohashi Museum of Natural History A crowdsourcing approach to collecting photo-based insect and plant observation records Hemiptera (Homoptera) collection of National Museum of Nature and Science Fish specimens of Ryukyu University Museum (Fujukan) The Masayo Kato Insect Collection (Lepidoptera: Rhopalocera) of The University Museum, The University of Tokyo The Insect Collection of Prof. Chûjirô Sasaki and associated researchers, The University Museum, The University of Tokyo. Hokkaido University Coleoptera Collection Vascular plant specimens of Sugadaira Research Station, Mountain Science Center, University of Tsukuba NIAES Coleoptera Specimen Database Ibaraki Nature Museum, Arthropoda collection The Masao Oita Insect Collection of The University Museum, The University of Tokyo Lichen specimen database of Faurie collection Ibaraki Nature Museum, Mollusk collection Bryophyte specimens of Toyama Science Museum Occurrence data of woody plants in the Ginkakuzi-san National Forest Spermatophyta collection of Museum of Natural and Environmental History, Shizuoka Specimen-based records of geometrid, pyralid, and crambid moths (Lepidoptera) with location information from the collection of Dr. Hiroshi Inoue Ibaraki Nature Museum, Mammals collection Crustacea specimens of Ryukyu University Museum (Fujukan) Ibaraki Nature Museum, Fish collection Fixed Point Survey for Shorebirds of the family Scolopacidae and Charadriidae Porifera Specimens of the Yamagata Prefectural Museum Ibaraki Nature Museum, Birds collection Bird specimens of Saitama Museum of Natural History Ibaraki Nature Museum, Bryophyta collection Fish specimens of Toyama Science Museum Herbarium of Shinshu University Ibaraki Nature Museum, Amphibians and Reptiles collection Plant specimens of Parthenon Tama Museum (PTHM) Plant specimens of Obihiro Centennial City Museum Ibaraki Nature Museum, Fungi collection Vascular plant specimens of Nagano Environmental Conservation Research Institute, Nagano Prefecture The Yasunori Kishida Insect Collection (Coleoptera: Disteniidae and Cerambycidae) of The University Museum, The University of Tokyo Plant Observation Records of Japan Bird specimens of Ryukyu University Museum (Fujukan) Mammal specimens of Saitama Museum of Natural History Botanical Specimens of Kaizuka City Museum of Natural History (KCMN) Protozoa collection of National Museum of Nature and Science Insect collection of Biodiversity Center of Japan, Ministry of the Environment Hymenoptera Specimens of Yamaguchi prefectural Yamaguchi Museum Tracheophyta collection of Biodiversity Center of Japan, Ministry of the Environment Fungal specimens of Komatsu City Museum Ibaraki Nature Museum, Algae collection Arachnid specimens of Ryukyu University Museum (Fujukan) Microfossil collection of National Museum of Nature and Science Ibaraki Nature Museum, Lichen collection Mollusca specimens of Wakayama Prefectural Museum of Natural History Vascular plant specimens of The Shirakami Research Center for Environmental Sciences, Hirosaki University Shellfish specimens of the Nishinomiya Shell Museum, Japan Diptera Specimens of Yamaguchi prefectural Yamaguchi Museum Fish collection of the Museum of Nature and Human Activities, Hyogo Benthos collection of the Museum of Nature and Human Activities, Hyogo Akita Prefectural Museum, Observation Records of Birds in Akita Prefecture Ibaraki Nature Museum, Vascular Plants collection Japan Collection of Microorganisms, RIKEN BioResource Center Fish Collection of Yokosuka City Museum Fish Collection of Hokkaido University Hemiptera Specimens of Yamaguchi prefectural Yamaguchi Museum Vascular plant specimens of Aomori City Forestry Museum Lichen specimens of National Museum of Nature and Science (TNS) Asahikawa Educational College herbarium JODC Dataset Ground Beetle of Japan Specimen Database Mammal specimens of Toyota City Nature Sanctuary Plant specimens of the Museum of Yamagata University Plant specimens of Toyota City Nature Sanctuary (from non-museum circle) Brown algae specimens of Komatsu City Museum Vascular plant specimens of Toyama Science Museum Bryophyte specimens of National Museum of Nature and Science (TNS) Crustacean specimens of Kaizuka City Museum of Natural History Insect specimens of Komatsu City Museum Macroalgal collection of National Museum of Nature and Science (TNS) A Specimen List of Hymenophyllaceae of Seram and Ambon collected on Indonesian-Japanese botanical expeditions 1983–1986 Insect specimens of Toyama Science Museum Vascular plant specimens of National Museum of Nature and Science (TNS) Specimen records of spiders (Arachnida: Araneae) by monthly census for 3 years in forest areas of Yakushima Island, Japan Plant specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Myxomycete specimens of National Museum of Nature and Science (TNS) Coelenterata (Cnidaria and Ctenophora) collection of National Museum of Nature and Science Insect specimens of Kashihara City Museum of Insect Mesozoa collection of National Museum of Nature and Science Kyoto University Reptile Collection Plant Specimens of Kurashiki Museum of Natural History Herbarium Specimens of Tokushima Prefectural Museum, Japan Fish Specimens of Tokushima Prefectural Museum, Japan Insect Specimen Database of Fukui City Museum of Natural History Insect specimens of Omogo Mountain Museum Fish Specimens of Graduate School of Bioresources Mie University Osaka Prefectural Minoh Park Insects Museum Herbarium of Kitakyushu Museum of Natural History and Human History Bryophyte specimens database of Mr. Tsutomu Kodama collection Fish specimen database of Osaka Museum of Natural History Hymenopteran specimen database of Osaka Museum of Natural History Fish collection of National Museum of Nature and Science Bird collection of National Museum of Nature and Science Mammal collection of National Museum of Nature and Science Freshwater Fish Specimens of Lake Biwa Museum Fish Collection of Natural History Museum and Institute, Chiba Plant Specimens of Lake Biwa Museum Spermatophyta specimens of Iwate Prefectural Museum Rust fungus specimen of Research Group of Plant Parasitic Mycology, Faculty of Life and Environmental Sciences, University of Tsukuba Herpetological collection of National Museum of Nature and Science Fish Collection of Kanagawa Prefectural Museum of Natural History Vascular Plants Collection of Sagamihara City Museum Fungi specimens of Kawasaki Municipal Science Museum Mollusca collection, Museum of Natural and Environmental History, Shizuoka Plant specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Insect specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Freshwater Fish specimens of Taga Town Museum, Shiga Pref., Japan