| RRC ID |
73249
|
| 著者 |
Melton AE, Galla SJ, Dumaguit CDC, Wojahn JMA, Novak S, Serpe M, Martinez P, Buerki S.
|
| タイトル |
Meta-Analysis Reveals Challenges and Gaps for Genome-to-Phenome Research Underpinning Plant Drought Response.
|
| ジャーナル |
Int J Mol Sci
|
| Abstract |
Severe drought conditions and extreme weather events are increasing worldwide with climate change, threatening the persistence of native plant communities and ecosystems. Many studies have investigated the genomic basis of plant responses to drought. However, the extent of this research throughout the plant kingdom is unclear, particularly among species critical for the sustainability of natural ecosystems. This study aimed to broaden our understanding of genome-to-phenome (G2P) connections in drought-stressed plants and identify focal taxa for future research. Bioinformatics pipelines were developed to mine and link information from databases and abstracts from 7730 publications. This approach identified 1634 genes involved in drought responses among 497 plant taxa. Most (83.30%) of these species have been classified for human use, and most G2P interactions have been described within model organisms or crop species. Our analysis identifies several gaps in G2P research literature and database connectivity, with 21% of abstracts being linked to gene and taxonomy data in NCBI. Abstract text mining was more successful at identifying potential G2P pathways, with 34% of abstracts containing gene, taxa, and phenotype information. Expanding G2P studies to include non-model plants, especially those that are adapted to drought stress, will help advance our understanding of drought responsive G2P pathways.
|
| 巻・号 |
23(20)
|
| 公開日 |
2022-10-14
|
| DOI |
10.3390/ijms232012297
|
| PII |
ijms232012297
|
| PMID |
36293161
|
| PMC |
PMC9602940
|
| MeSH |
Adaptation, Physiological / genetics
Droughts*
Ecosystem*
Humans
Phenomics
Plants / genetics
Stress, Physiological / genetics
|
| IF |
4.556
|
| リソース情報 |
| GBIF |
Plant specimens of Otaru Museum
Vascular plant specimens of Akita Prefectural Museum
Herbarium, University Archives and Collections, Fukushima University, Japan (FKSE)
Vascular Plant Collection of Natural History Museum and Institute, Chiba
Herbarium Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan
Spermatophyta specimens of Iwate Prefectural Museum
Plant specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan
Plant specimens deposited in Osaka Museum of Natural History, Japan
Vascular Plant Specimens of Kochi Prefectural Makino Botanical Garden
Vascular Plant Specimen database of Kanagawa Prefectural Museum of Natural History
Gunma Museum of Natural History, Vascular Plant Specimen
Plant specimens of Kushiro City Museum
Vascular plant specimens of Sugadaira Research Station, Mountain Science Center, University of Tsukuba
Vascular plant specimens of Nagano Environmental Conservation Research Institute, Nagano Prefecture
Vascular plant specimens of Toyama Science Museum |
