Reference - Detail
| RRC ID | 75528 |
|---|---|
| Author | Cao X, Yi Z, Qiu X, Wu H, Yu L, Tang X. |
| Title | Genomic analysis of Shewanella eurypsychrophilus YLB-09 reveals backgrounds related to its deep sea environment adaptation. |
| Journal | Mar Genomics |
| Abstract |
Shewanella eurypsychrophilus YLB-09 is a psychrophilic and piezotolerant bacterium that was isolated from 2699 m deep sea sediments of the Southwest Indian Ocean. The complete genome sequence of the strain Shewanella eurypsychrophilus YLB-09 was analyzed. The genome of Shewanella eurypsychrophilus YLB-09 contained one single circular chromosome 6,225,487 base pairs with a 43.6 mol% G + C content of 52 ribosomal RNA genes and 5124 protein-coding genes. YLB-09 has the largest number of genes related to energy production and conversion among 22 available complete genomes of Shewanella genus. Meanwhile， a large quantity of genes encoding flagellum/fimbrial-related proteins and two major secondary metabolic gene clusters were found in YLB-09. These data could provide insights into the mechanism of this strain in adapting to deep sea extreme environments. |
| Volume | 64 |
| Pages | 100956 |
| Published | 2022-8-1 |
| DOI | 10.1016/j.margen.2022.100956 |
| PII | S1874-7787(22)00034-4 |
| PMID | 35811106 |
| MeSH | DNA, Bacterial / genetics Genomics Geologic Sediments / microbiology Phylogeny RNA, Ribosomal, 16S / genetics Seawater / microbiology Sequence Analysis, DNA Shewanella* / genetics |
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| Total number of mentions | 1 |
| Altmetric score changes over past 6months | 0.0 |
| Resource | |
| General Microbes | JCM 33200 |