RRC ID 77145
著者 Li D, Lin HY, Wang X, Bi B, Gao Y, Shao L, Zhang R, Liang Y, Xia Y, Zhao YP, Zhou X, Zhang L.
タイトル Genome and whole-genome resequencing of Cinnamomum camphora elucidate its dominance in subtropical urban landscapes.
ジャーナル BMC Biol
Abstract BACKGROUND:Lauraceae is well known for its significant phylogenetic position as well as important economic and ornamental value; however, most evergreen species in Lauraceae are restricted to tropical regions. In contrast, camphor tree (Cinnamomum camphora) is the most dominant evergreen broadleaved tree in subtropical urban landscapes.
RESULTS:Here, we present a high-quality reference genome of C. camphora and conduct comparative genomics between C. camphora and C. kanehirae. Our findings demonstrated the significance of key genes in circadian rhythms and phenylpropanoid metabolism in enhancing cold response, and terpene synthases (TPSs) improved defence response with tandem duplication and gene cluster formation in C. camphora. Additionally, the first comprehensive catalogue of C. camphora based on whole-genome resequencing of 75 accessions was constructed, which confirmed the crucial roles of the above pathways and revealed candidate genes under selection in more popular C. camphora, and indicated that enhancing environmental adaptation is the primary force driving C. camphora breeding and dominance.
CONCLUSIONS:These results decipher the dominance of C. camphora in subtropical urban landscapes and provide abundant genomic resources for enlarging the application scopes of evergreen broadleaved trees.
巻・号 21(1)
ページ 192
公開日 2023-9-12
DOI 10.1186/s12915-023-01692-1
PII 10.1186/s12915-023-01692-1
PMID 37697363
PMC PMC10496300
MeSH Cinnamomum camphora* / genetics Genomics Phylogeny Plant Breeding Sequence Analysis, DNA
IF 6.765
リソース情報
GBIF Vascular plant specimens of Nagano Environmental Conservation Research Institute, Nagano Prefecture Vascular plant specimens of The Shirakami Research Center for Environmental Sciences, Hirosaki University Asahikawa Educational College herbarium Vascular plant specimens of Toyama Science Museum Plant specimens of Takatsuki Nature Museum (Aquapia Akutagawa) Long-term fauna and flora records of the experimental forests of the Forest Research Station of Hokkaido University, Japan Spermatophyte collection of Himeji City Science Museum Plant specimens of Toyota City Nature Sanctuary Plant specimens of Tochigi Prefectural Museum Plant Specimen Database of Tama Forest Science Garden, Forestry and Forest Products Research Institute, Japan Plant specimens of Otaru Museum Plant specimens of Horaiji-san Museum of Natural History Toji K. collection The 6-7th National Survey on the Natural Environment: Vegetation Survey Herbaceous and arboreous plants list on the Komaba Campus of University of Tokyo, Japan Vascular Plant Specimens of Yamagata Prefectural Museum Plant Specimens collections of the Kyushu University Museum Vascular plant specimens of Akita Prefectural Museum Vascular plants database of Atsugi City Museum Herbarium, University Archives and Collections, Fukushima University, Japan (FKSE) Angiospermatatophytina Collection of Saitama Museum of Natural History Vascular Plant Collection of Natural History Museum and Institute, Chiba Herbarium Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Spermatophyta collection of Museum of Natural and Environmental History, Shizuoka Ibaraki Nature Museum, Vascular Plants collection Vascular plant specimens of National Museum of Nature and Science (TNS) Plant Specimens of Kurashiki Museum of Natural History Herbarium Specimens of Tokushima Prefectural Museum, Japan Herbarium of Kitakyushu Museum of Natural History and Human History Plant Specimens of Lake Biwa Museum Spermatophyta specimens of Iwate Prefectural Museum Vascular Plants Collection of Sagamihara City Museum Plant specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Plant specimens deposited in Osaka Museum of Natural History, Japan Vascular Plant Specimens of Kochi Prefectural Makino Botanical Garden Plant Specimens of The Shimane Nature Museum of Mt. Sanbe Vascular Plant Specimen database of Kanagawa Prefectural Museum of Natural History Gunma Museum of Natural History, Vascular Plant Specimen Vascular plants collection of Hiratsuka City Museum Plant specimens of Horaiji-san Museum of Natural History Kichi T. collection Herbarium Specimens of Bonin and Ryukyu Islands Vascular plant specimens of Sugadaira Research Station, Mountain Science Center, University of Tsukuba Occurrence data of woody plants in the Ginkakuzi-san National Forest Plant specimens of Parthenon Tama Museum (PTHM)