RRC ID 77701
著者 Dorey JB, Fischer EE, Chesshire PR, Nava-Bolaños A, O'Reilly RL, Bossert S, Collins SM, Lichtenberg EM, Tucker EM, Smith-Pardo A, Falcon-Brindis A, Guevara DA, Ribeiro B, de Pedro D, Pickering J, Hung KJ, Parys KA, McCabe LM, Rogan MS, Minckley RL, Velazco SJE, Griswold T, Zarrillo TA, Jetz W, Sica YV, Orr MC, Guzman LM, Ascher JS, Hughes AC, Cobb NS.
タイトル A globally synthesised and flagged bee occurrence dataset and cleaning workflow.
ジャーナル Sci Data
Abstract Species occurrence data are foundational for research, conservation, and science communication, but the limited availability and accessibility of reliable data represents a major obstacle, particularly for insects, which face mounting pressures. We present BeeBDC, a new R package, and a global bee occurrence dataset to address this issue. We combined >18.3 million bee occurrence records from multiple public repositories (GBIF, SCAN, iDigBio, USGS, ALA) and smaller datasets, then standardised, flagged, deduplicated, and cleaned the data using the reproducible BeeBDC R-workflow. Specifically, we harmonised species names (following established global taxonomy), country names, and collection dates and, we added record-level flags for a series of potential quality issues. These data are provided in two formats, "cleaned" and "flagged-but-uncleaned". The BeeBDC package with online documentation provides end users the ability to modify filtering parameters to address their research questions. By publishing reproducible R workflows and globally cleaned datasets, we can increase the accessibility and reliability of downstream analyses. This workflow can be implemented for other taxa to support research and conservation.
巻・号 10(1)
ページ 747
公開日 2023-11-2
DOI 10.1038/s41597-023-02626-w
PII 10.1038/s41597-023-02626-w
PMID 37919303
PMC PMC10622554
MeSH Animals Bees* Publishing Workflow
IF 5.541
リソース情報
GBIF Insect Specimens of the Yamagata Prefectural Museum Insect specimens of Bihoro Museum Insect specimens of Himeji City Science Museum Insect specimens of Kaizuka City Museum of Natural History Insect specimens of Rikuzen-Takata City Museum Insect specimens of Iwate Prefectural Museum Insect specimens of Toyota City Nature Sanctuary Asia-Pacific Dataset Hymenoptera specimen database of Kyushu University The Masayo Kato Insect Collection (Hymenoptera) of The University Museum, The University of Tokyo Marine Biological Sample Database, JAMSTEC Insect specimen database of Kanagawa Prefectural Museum of Natural History Kyushu University Museum Coleoptera Collection Insect specimens of Okinawa Prefectural Museum & Art Museum Bee occurrence data collected in "Hanamaru-Maruhana national census (Bumble bee national census)" in Japan Entomological Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Insects Specimens of Kagoshima Prefectural Museum Insect specimens of Kushiro City Museum Fossil specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Akita Prefectural Museum, Insect Collection Plankton&BenthosResearch Insect Collection of Saitama Museum of Natural History Ibaraki Nature Museum, Arthropoda collection Insect specimens of Kashihara City Museum of Insect Insect Specimen Database of Fukui City Museum of Natural History Osaka Prefectural Minoh Park Insects Museum Hymenopteran specimen database of Osaka Museum of Natural History Insect specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Insect collection of Itami City Museum of Insects Invertebrate fossil collection of National Museum of Nature and Science Insecta Specimens of Kawasaki Municipal Science Museum Fossil specimens of Tochigi Prefectural Museum Insect specimens of Ryukyu University Museum (Fujukan) Insect specimen database of Atsugi City Museum Gunma Museum of Natural History, Insect Specimen Insect Collection of Natural History Museum and Institute, Chiba Insect specimens of Nasunogahara Museum Insect specimens of Tokushima Prefectural Museum Insect specimens of Hokkaido University Hymenoptera collection of National Museum of Nature and Science The Insect Collection of Prof. Chûjirô Sasaki and associated researchers, The University Museum, The University of Tokyo. Insect collection of Biodiversity Center of Japan, Ministry of the Environment Hymenoptera Specimens of Yamaguchi prefectural Yamaguchi Museum JODC Dataset Insect specimens of Komatsu City Museum Insect specimens of Toyama Science Museum