Reference - Detail
| RRC ID | 80237 |
|---|---|
| Author | Nishiyama C, Sekiguchi S, Sugihara Y, Nishikawa M, Makita N, Segawa T, Terasaki M, Takagi H, Koyanagi T. |
| Title | Phylogenomic analysis in Latilactobacillus sakei by using polymorphisms detected by next-generation sequencing. |
| Journal | Biosci Microbiota Food Health |
| Abstract |
Latilactobacillus sakei is a lactic acid bacterium used to produce a wide range of fermented food products. To understand their characteristics and adaptability to various nutrient sources, we applied strain-specific, nucleotide-concatenated (SSC) sequences to the phylogenetic analysis of 32 L. sakei strains isolated from various locations and products. SSC sequences were developed by concatenating the polymorphisms detected by whole-genome sequencing. This enabled us to use sufficient polymorphisms and avoid the bias caused by selecting partial sequences, such as that in core genome and multi-locus sequence typing. SSC sequence-based analysis revealed that the phylogenetic relations for L. sakei are based on the different nutrition sources rather than geographical distance. |
| Volume | 42(2) |
| Pages | 138-142 |
| Published | 2023-1-1 |
| DOI | 10.12938/bmfh.2022-017 |
| PII | 2022-017 |
| PMID | 37016685 |
| PMC | PMC10067329 |
| Altmetric score |
オルトメトリクス指標項目
|
| The most frequently cited source | X(Twitter) |
| Total number of mentions | 1 |
| Altmetric score changes over past 6months | 0.0 |
| Resource | |
| General Microbes | JCM 1157 JCM 1128 JCM 1129 JCM 11031 JCM 12491 |