| RRC ID |
80237
|
| Author |
Nishiyama C, Sekiguchi S, Sugihara Y, Nishikawa M, Makita N, Segawa T, Terasaki M, Takagi H, Koyanagi T.
|
| Title |
Phylogenomic analysis in Latilactobacillus sakei by using polymorphisms detected by next-generation sequencing.
|
| Journal |
Biosci Microbiota Food Health
|
| Abstract |
Latilactobacillus sakei is a lactic acid bacterium used to produce a wide range of fermented food products. To understand their characteristics and adaptability to various nutrient sources, we applied strain-specific, nucleotide-concatenated (SSC) sequences to the phylogenetic analysis of 32 L. sakei strains isolated from various locations and products. SSC sequences were developed by concatenating the polymorphisms detected by whole-genome sequencing. This enabled us to use sufficient polymorphisms and avoid the bias caused by selecting partial sequences, such as that in core genome and multi-locus sequence typing. SSC sequence-based analysis revealed that the phylogenetic relations for L. sakei are based on the different nutrition sources rather than geographical distance.
|
| Volume |
42(2)
|
| Pages |
138-142
|
| Published |
2023-1-1
|
| DOI |
10.12938/bmfh.2022-017
|
| PII |
2022-017
|
| PMID |
37016685
|
| PMC |
PMC10067329
|
| Resource |
| General Microbes |
JCM 1157
JCM 1128
JCM 1129
JCM 11031
JCM 12491 |
