Reference - Detail
| RRC ID | 81206 |
|---|---|
| Author | Ovaskainen O, Abrego N, Furneaux B, Hardwick B, Somervuo P, Palorinne I, Andrew NR, Babiy UV, Bao T, Bazzano G, Bondarchuk SN, Bonebrake TC, Brennan GL, Bret-Harte S, Bässler C, Cagnolo L, Cameron EK, Chapurlat E, Creer S, D'Acqui LP, de Vere N, Desprez-Loustau ML, Dongmo MAK, Dyrholm Jacobsen IB, Fisher BL, Flores de Jesus M, Gilbert GS, Griffith GW, Gritsuk AA, Gross A, Grudd H, Halme P, Hanna R, Hansen J, Hansen LH, Hegbe ADMT, Hill S, Hogg ID, Hultman J, Hyde KD, Hynson NA, Ivanova N, Karisto P, Kerdraon D, Knorre A, Krisai-Greilhuber I, Kurhinen J, Kuzmina M, Lecomte N, Lecomte E, Loaiza V, Lundin E, Meire A, Mešić A, Miettinen O, Monkhause N, Mortimer P, Müller J, Nilsson RH, Nonti PYC, Nordén J, Nordén B, Paz C, Pellikka P, Pereira D, Petch G, Pitkänen JM, Popa F, Potter C, Purhonen J, Pätsi S, Rafiq A, Raharinjanahary D, Rakos N, Rathnayaka AR, Raundrup K, Rebriev YA, Rikkinen J, Rogers HMK, Rogovsky A, Rozhkov Y, Runnel K, Saarto A, Savchenko A, Schlegel M, Schmidt NM, Seibold S, Skjøth C, Stengel E, Sutyrina SV, Syvänperä I, Tedersoo L, Timm J, Tipton L, Toju H, Uscka-Perzanowska M, van der Bank M, Herman van der Bank F, Vandenbrink B, Ventura S, Vignisson SR, Wang X, Weisser WW, Wijesinghe SN, Joseph Wright S, Yang C, Yorou NS, Young A, Yu DW, Zakharov EV, Hebert PDN, Roslin T. |
| Title | Global Spore Sampling Project: A global, standardized dataset of airborne fungal DNA. |
| Journal | Sci Data |
| Abstract |
Novel methods for sampling and characterizing biodiversity hold great promise for re-evaluating patterns of life across the planet. The sampling of airborne spores with a cyclone sampler, and the sequencing of their DNA, have been suggested as an efficient and well-calibrated tool for surveying fungal diversity across various environments. Here we present data originating from the Global Spore Sampling Project, comprising 2,768 samples collected during two years at 47 outdoor locations across the world. Each sample represents fungal DNA extracted from 24 m3 of air. We applied a conservative bioinformatics pipeline that filtered out sequences that did not show strong evidence of representing a fungal species. The pipeline yielded 27,954 species-level operational taxonomic units (OTUs). Each OTU is accompanied by a probabilistic taxonomic classification, validated through comparison with expert evaluations. To examine the potential of the data for ecological analyses, we partitioned the variation in species distributions into spatial and seasonal components, showing a strong effect of the annual mean temperature on community composition. |
| Volume | 11(1) |
| Pages | 561 |
| Published | 2024-5-30 |
| DOI | 10.1038/s41597-024-03410-0 |
| PII | 10.1038/s41597-024-03410-0 |
| PMID | 38816458 |
| PMC | PMC11139991 |
| MeSH | Air Microbiology* Biodiversity DNA, Fungal* / analysis Fungi / classification Fungi / genetics Spores, Fungal* |
| IF | 5.541 |
| Resource | |
| GBIF | Lichen spceimens of Kushiro City Museum Fungi specimens of Saitama Museum of Natural History Fungal Specimens of Sagamihara City Museum Plant specimens of Otaru Museum Biological Resource Center, Department of Biotechnology, National Institute of Technology and Evaluation Fungal specimens of Bihoro Museum Lichen specimens of Saitama Museum of Natural History Fungal Collection of Natural History Museum and Institute, Chiba Ibaraki Nature Museum, Fungi collection Ibaraki Nature Museum, Lichen collection Japan Collection of Microorganisms, RIKEN BioResource Center Lichen specimens of National Museum of Nature and Science (TNS) Rust fungus specimen of Research Group of Plant Parasitic Mycology, Faculty of Life and Environmental Sciences, University of Tsukuba Fungi specimens of Kawasaki Municipal Science Museum Fungal specimens of Faculty of Agriculture and Life Science, Hirosaki University Gunma Museum of Natural History, Fungi Specimen Fungi specimen database of Kanagawa Prefectural Museum of Natural History Fungal Specimens of National Museum of Nature and Science (TNS) Genebank, National Institute of Agrobiological Sciences Fungal Specimens of Toyota City Nature Sanctuary (TCNS). Plant specimens of Bihoro Museum The Masayo Kato Fungi Collection, The University Museum, The University of Tokyo. Lichen specimen database of Faurie collection Fungal specimens of Komatsu City Museum Mycological Collection of Osaka Museum of Natural History |