RRC ID 85610
著者 Csilléry K, Yang H, Hung TH, Rodríguez-Rodríguez P, Miller J, Mantovani V, Chauvier-Mendes Y, Nobis MP.
タイトル GenDivRange: A global dataset of geo-referenced population genetic diversity across species ranges.
ジャーナル Sci Data
Abstract The spatial distribution of genetic diversity within a species' range reflects its past demographic history, and its knowledge is essential to better understand the limits of species ranges and to predict range shifts in response to a changing environment. We present GenDivRange, a unified dataset of published geo-referenced estimates of genetic diversity for 1,109 species, each represented by at least five populations placed on their range maps estimated from Global Biodiversity Information Facility (GBIF) observations. A total of 19,173 populations across the globe and from most major taxa, covering terrestrial, freshwater, and marine organisms, are included. At least one of the three genetic diversity estimates is available for each study: expected heterozygosity, Nei's gene diversity, or allelic richness, mostly estimated from microsatellite markers. Additionally, the dataset contains the detailed taxonomy, biome, breeding, and adult habitat of each species.
巻・号 12(1)
ページ 980
公開日 2025-6-11
DOI 10.1038/s41597-025-05303-2
PII 10.1038/s41597-025-05303-2
解説 J-OBIS data were referenced. NIES data were referenced. BiodiC-J data were referenced.
PMID 40500268
PMC PMC12159139
MeSH Animals Biodiversity Ecosystem Genetic Variation* Genetics, Population Microsatellite Repeats
IF 5.541
リソース情報
GBIF Plant specimens of Ishikawa Museum of Natural History Database of Aquatic Macrophytes in Japanese lakes Mollusca collection of National Museum of Nature and Science Plant Specimens of The Cattle Museum Long-term fauna and flora records of the experimental forests of the Forest Research Station of Hokkaido University, Japan Spermatophyte collection of Himeji City Science Museum Plant specimens of Toyota City Nature Sanctuary Herbarium Specimens of The Kagoshima University Museum (KAG) Biodiversity monitoring in Nakaikemi-shicchi Insect specimens of Kaizuka City Museum of Natural History Organisms observed during the Shipboard Oceanographic Laboratory 3, Department of Marine Biology, Tokai University Insect specimens of Iwate Prefectural Museum Japanese Woody Plants Fish specimens of Toyama Science Museum Asia-Pacific Dataset Bird specimens of Kawasaki Municipal Science Museum Gunma Museum of Natural History, Vertebrate Fossil Specimen Vascular plant specimens of the herbarium of the Tohoku University (TUS) Herbarium of Shinshu University Spermatophyta Specimens of Kawasaki Municipal Science Museum Plant specimens of Parthenon Tama Museum (PTHM) Botanical collection of Gifu Prefecture Museum Plant specimens of Obihiro Centennial City Museum Occurrence data of seagrasses in Southeast Asia extracted from literature Vascular plant specimens of Nagano Environmental Conservation Research Institute, Nagano Prefecture Plant Observation Records of Japan Plantae collection of Hokkaido Museum Mammal specimens of Saitama Museum of Natural History Mollusca specimens of Wakayama Prefectural Museum of Natural History Insect Specimens of Kitami Region Museum of Science History and Art Vascular plant specimens of The Shirakami Research Center for Environmental Sciences, Hirosaki University Mollusc specimens of Parthenon Tama Museum (PTHM) Mammal specimens of Toyota City Nature Sanctuary Moth collecting data in Mori, Tojo, Hiroshima Plant specimens of Toyota City Nature Sanctuary (from non-museum circle) Bird specimens of Obihiro Centennial City Museum Vascular plant specimens of Toyama Science Museum Insect specimens of Sagamihara City Museum Simultaneous surveys of littoral organisms in Osaka Bay Vascular plant specimens of Omachi Alpine Museum Monitoring Sites 1000 Satoyama Mammals Lepidoptera collection of National Museum of Nature and Science Occurrence dataset of demersal fish and benthic organisms in the deep-sea off the northeastern coast of Japan, recorded by ROV after the 2011 Earthquake off the Pacific coast of Tohoku Plant distribution data with photograph Invertebrate collection of Hokkaido Museum Mammal specimens of Obihiro Centennial City Museum Plant Specimen Database of Tama Forest Science Garden, Forestry and Forest Products Research Institute, Japan Acoustic monitoring data of avian species inside and outside the evacuation zone of the Fukushima Daiichi power plant accident Mammal specimens of Oiso Municipal Museum Mollusca specimens of Toyama Science Museum Fish specimens of Natural History Museum, Kishiwada City Marine Biological Sample Database, JAMSTEC Bird Specimens in the Museum of Nature and Human Activities, Hyogo, Japan Plant specimens of Otaru Museum Marine Invertebrata specimen database of Osaka Museum of Natutal History Fish monitoring data in Lake Kasumigaura Tree survey in the tropical forest of Pasoh Forest Reserve, Malaysia from 2016 to 2018 The south coast survey of Hatakejima Islands from 1969 Vascular plant specimens of Akita Prefectural Museum Akita Prefectural Museum, Insect Collection Survey data of seagrass beds on the Monitoring sites 1000 project, BDCJ Akita Prefectural Museum, Hiroki Watanabe Collection Herbarium, University Archives and Collections, Fukushima University, Japan (FKSE) Angiospermatatophytina Collection of Saitama Museum of Natural History Bird Specimens of The Cattle Museum The entire coast survey of Hatakejima Islands from 1983 AIS Wildtype Populations of Arabidopsis Plankton&BenthosResearch Plant specimens of Komatsu City Museum Plant specimens of Oiso Municipal Museum Mollusca specimens of Oiso Municipal Museum Mollusk Collection of Yokosuka City Museum Birds Specimens of Akita Prefectural Museum Flora of Japan Specimen Database Mollusca specimens of Kuroshio Biological Research Foundation Cetacean Stranding Data in Hokkaido Herbarium of Hokkaido University Museum (SAPS) Paleobotany collection of National Museum of Nature and Science Fish collection of the Kagoshima University Museum Actinopterygius Specimens of Akita Prefectural Museum The 6-7th National Survey on the Natural Environment: Vegetation Survey Amphibians Specimens of Akita Prefectural Museum Vascular Plant Collection of Natural History Museum and Institute, Chiba Mammal assemblages recorded by camera traps inside and outside the evacuation zone of the Fukushima Daiichi Nuclear Power Plant accident Echinodermata specimens of Kuroshio Biological Research Foundation Herbarium Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan Herbaceous and arboreous plants list on the Komaba Campus of University of Tokyo, Japan Mammalians Specimens of Akita Prefectural Museum Chondrichthyans Specimens of Akita Prefectural Museum Vascular Plant Specimens of Yamagata Prefectural Museum Molluscus specimens of Toyohashi Museum of Natural History Ibaraki Nature Museum, Mollusk collection Ibaraki Nature Museum, Mammals collection Ibaraki Nature Museum, Fish collection Ibaraki Nature Museum, Birds collection Ibaraki Nature Museum, Amphibians and Reptiles collection Shellfish specimens of the Nishinomiya Shell Museum, Japan Fish collection of the Museum of Nature and Human Activities, Hyogo Akita Prefectural Museum, Observation Records of Birds in Akita Prefecture Ibaraki Nature Museum, Vascular Plants collection Vascular plant collection of The University Museum, The University of Tokyo Kitami Region Museum of Science History and Art(KIRM) Fish Collection of Yokosuka City Museum Fish Collection of Hokkaido University Vascular plant specimens of National Museum of Nature and Science (TNS) Plant Specimens of Kurashiki Museum of Natural History Herbarium Specimens of Tokushima Prefectural Museum, Japan Fish Specimens of Graduate School of Bioresources Mie University Fish specimen database of Osaka Museum of Natural History Fish collection of National Museum of Nature and Science Fish Collection of Natural History Museum and Institute, Chiba Spermatophyta specimens of Iwate Prefectural Museum Herpetological collection of National Museum of Nature and Science Vascular Plants Collection of Sagamihara City Museum Plant specimens in the Museum of Nature and Human Activities, Hyogo Prefecture, Japan Amphibian specimens of Toyama Science Museum Molluscan collection of Osaka Museum of Natural History Plant specimens deposited in Osaka Museum of Natural History, Japan Insect collection of Itami City Museum of Insects Vascular Plant Specimens of Kochi Prefectural Makino Botanical Garden Zoological specimens of Gifu Prefectural Museum Plant specimens of Kiritappu Wetland Center Invertebrate fossil collection of National Museum of Nature and Science Mammal specimens of Komatsu City Museum Mammal specimens of Kawasaki Municipal Science Museum Marine benthic animal data along Yokohama City Coast Vascular Plant Specimen database of Kanagawa Prefectural Museum of Natural History Gunma Museum of Natural History, Vascular Plant Specimen Gunma Museum of Natural History, Molluscan Specimen Gunma Museum of Natural History, Fish Specimen Gunma Museum of Natural History, Amphibia and Reptile Specimen Gunma Museum of Natural History, Mammal Specimen Insect Collection of Natural History Museum and Institute, Chiba Vascular plants collection of Hiratsuka City Museum Vascular Plant Specimens of the URO Herbarium (Faculty of Education, University of the Ryukyus) Plant specimens of Kushiro City Museum Bird specimens of Komatsu City Museum Acoustic monitoring data of anuran species inside and outside the evacuation zone of the Fukushima Daiichi power plant accident Mammal Specimens of The Cattle Museum Molluscan fossils of Natural History Museum and Institute, Chiba Annual Census on Waterfowl (Anatidae) Population A dataset for vascular plant diversity monitoring for the natural World Heritage site on Amami-Oshima Island, Tokunoshima Island, and the northern Okinawa Island Survey data of tidal flats on the Monitoring sites 1000 project, BDCJ Monitoring Sites 1000 Satoyama Birds Mollusca specimens of Manazuru Shell Museum Vascular Plant Specimens of the RYU Herbarium (Faculty of Science, University of the Ryukyus) Fish Collection of Coastal Branch of Natural History Museum and Institute, Chiba Bird specimens of Toyota City Nature Sanctuary Mammal specimens of Tochigi Prefectural Museum Forest monitoring data of 45 plots over the Japanese archipelago during the period of 1980-2021 Microbial Culture Collection, National Institute for Environmental Studies Plant specimens of Mie Prefectural Museum Bird specimens of Oiso Municipal Museum Database of Japanese semi-natural grassland flora Vascular plant specimens of Sugadaira Research Station, Mountain Science Center, University of Tsukuba The 2nd and 3rd National Survey on the Natural Environment: Vegetation Survey (common species) The 2nd and 3rd National Survey on the Natural Environment: Vegetation Survey (rare species) Occurrence data of woody plants in the Ginkakuzi-san National Forest Gunma Museum of Natural History, Invertebrate fossil Specimen Fixed Point Survey for Shorebirds of the family Scolopacidae and Charadriidae Bird specimens of Saitama Museum of Natural History