| RRC ID |
15939
|
| 著者 |
Duangmal K, Mingma R, Pathom-Aree W, Thamchaipenet A, Inahashi Y, Matsumoto A, Takahashi Y.
|
| タイトル |
Amycolatopsis samaneae sp. nov., isolated from roots of Samanea saman (Jacq.) Merr.
|
| ジャーナル |
Int J Syst Evol Microbiol
|
| Abstract |
A novel actinomycete, designated strain RM287(T), was isolated from surface-sterilized roots of Samanea saman (Jacq.) Merr., collected from Bangkok, Thailand. The status of the novel strain was determined using a polyphasic taxonomic approach. Phylogenetic analyses based on 16S rRNA gene sequences showed that the organism formed a distinct phyletic line within the radiation of the genus Amycolatopsis. The 16S rRNA gene sequence similarity indicated that strain RM287(T) was most closely related to Amycolatopsis mediterranei IMSNU 20056(T) (97.4 %), A. rifamycinica DSM 46095(T) (97.2 %), A. kentuckyensis NRRL B-24129(T) (97.2 %), A. pretoriensis DSM 44654(T) (97 %) and A. australiensis DSM 44671(T) (97 %). The novel organism was found to have chemical properties typical of members of the genus Amycolatopsis such as meso-diaminopimelic acid as the dignostic diamino acid in the cell-wall peptidoglycan and arabinose and galactose as the diagnostic sugars. The major menaquinone was MK-9(H(4)). The major fatty acids were iso-C(16 : 0) iso-C(15 : 0), iso 2-OH-C(16 : 0) and iso-C(17 : 0). The DNA G+C content was 71.7 mol%. Phenotypic data clearly distinguished the novel isolate from its closest relatives. The combined genotypic and phenotypic data indicated that strain RM287(T) represented a novel species of the genus Amycolatopsis. The proposed name for this organism is Amycolatopsis samaneae sp. nov., with the type strain RM287(T) ( = TISTR 1919(T) = BCC 35842(T) = NBRC 106095(T)).
|
| 巻・号 |
61(Pt 4)
|
| ページ |
951-955
|
| 公開日 |
2011-4-1
|
| DOI |
10.1099/ijs.0.022699-0
|
| PMID |
20511469
|
| MeSH |
Actinomycetales / chemistry
Actinomycetales / classification*
Actinomycetales / genetics
Actinomycetales / isolation & purification*
Arabinose / analysis
Base Composition
Cell Wall / chemistry
Cluster Analysis
Cytoplasm / chemistry
DNA, Bacterial / chemistry
DNA, Bacterial / genetics
DNA, Ribosomal / chemistry
DNA, Ribosomal / genetics
Diaminopimelic Acid / analysis
Fabaceae / microbiology*
Fatty Acids / analysis
Galactose / analysis
Molecular Sequence Data
Phylogeny
Plant Roots / microbiology
RNA, Ribosomal, 16S / genetics
Sequence Analysis, DNA
Thailand
Vitamin K 2 / analysis
|
| IF |
2.415
|
| 引用数 |
15
|
|
WOS 分野
|
MICROBIOLOGY
|
| リソース情報 |
| 一般微生物 |
JCM 4789
JCM 12674
JCM 12670
JCM 12673
JCM 15587 |
