RRC ID 27476
Author Huo YY, Meng FX, Xu L, Wang CS, Xu XW.
Title Salinicola peritrichatus sp. nov., isolated from deep-sea sediment.
Journal Antonie Van Leeuwenhoek
Abstract A Gram stain-negative, aerobic and rod-shaped bacterium, strain DY22(T), was isolated from a deep-sea sediment collected from the east Pacific Ocean. The isolate was found to grow in the presence of 0-20.0 % (w/v) NaCl and at pH 4.5-8.5; optimum growth was observed with 0.5-2.0 % (w/v) NaCl and at pH 5.0-7.0. Chemotaxonomic analysis showed the presence of ubiquinone-9 as predominant respiratory quinone and C16:0, C19:0 ω8c cyclo and C12:0 3-OH as major cellular fatty acids. The genomic DNA G+C content was determined to be 59.6 mol%. Comparative 16S rRNA gene sequence analysis revealed that the novel isolate belongs to the genus Salinicola. Strain DY22(T) exhibited the closest phylogenetic affinity to the type strain of Salinicola salarius with 97.2 % sequence similarity and less than 97 % sequence similarity with respect to other Salinicola species with validly published names. The DNA-DNA reassociation values between strain DY22(T) and S. salarius DSM 18044(T) was 52 ± 4 %. On the basis of phenotypic, chemotaxonomic and genotypic data, strain DY22(T) represents a novel species of the genus Salinicola, for which the name Salinicola peritrichatus sp. nov. (type strain DY22(T) = CGMCC 1.12381(T) = JCM 18795(T)) is proposed.
Volume 104(1)
Pages 55-62
Published 2013-7-1
DOI 10.1007/s10482-013-9925-1
PMID 23609050
MeSH Anti-Bacterial Agents / pharmacology Base Composition Base Sequence DNA, Bacterial / genetics Fatty Acids / analysis Geologic Sediments / microbiology* Halomonadaceae / classification Halomonadaceae / drug effects Halomonadaceae / genetics Halomonadaceae / growth & development Halomonadaceae / isolation & purification* Halomonadaceae / metabolism Halomonadaceae / ultrastructure Hydrogen-Ion Concentration Lipids / analysis Microbial Sensitivity Tests Molecular Sequence Data Pacific Ocean Phenotype Phylogeny Quinones / analysis RNA, Bacterial / genetics RNA, Ribosomal, 16S / genetics Seawater / microbiology* Sequence Alignment Sequence Homology, Nucleic Acid Species Specificity Temperature Water Microbiology*
IF 2.674
Times Cited 5
WOS Category MICROBIOLOGY
Resource
General Microbes JCM 18795