論文 - 詳細
| RRC ID | 28837 |
|---|---|
| 著者 | Atanur SS, Diaz AG, Maratou K, Sarkis A, Rotival M, Game L, Tschannen MR, Kaisaki PJ, Otto GW, Ma MC, Keane TM, Hummel O, Saar K, Chen W, Guryev V, Gopalakrishnan K, Garrett MR, Joe B, Citterio L, Bianchi G, McBride M, Dominiczak A, Adams DJ, Serikawa T, Flicek P, Cuppen E, Hubner N, Petretto E, Gauguier D, Kwitek A, Jacob H, Aitman TJ. |
| タイトル | Genome sequencing reveals loci under artificial selection that underlie disease phenotypes in the laboratory rat. |
| ジャーナル | Cell |
| Abstract |
Large numbers of inbred laboratory rat strains have been developed for a range of complex disease phenotypes. To gain insights into the evolutionary pressures underlying selection for these phenotypes, we sequenced the genomes of 27 rat strains, including 11 models of hypertension, diabetes, and insulin resistance, along with their respective control strains. Altogether, we identified more than 13 million single-nucleotide variants, indels, and structural variants across these rat strains. Analysis of strain-specific selective sweeps and gene clusters implicated genes and pathways involved in cation transport, angiotensin production, and regulators of oxidative stress in the development of cardiovascular disease phenotypes in rats. Many of the rat loci that we identified overlap with previously mapped loci for related traits in humans, indicating the presence of shared pathways underlying these phenotypes in rats and humans. These data represent a step change in resources available for evolutionary analysis of complex traits in disease models. |
| 巻・号 | 154(3) |
| ページ | 691-703 |
| 公開日 | 2013-8-1 |
| DOI | 10.1016/j.cell.2013.06.040 |
| PII | S0092-8674(13)00779-4 |
| PMID | 23890820 |
| PMC | PMC3732391 |
| MeSH | Animals Disease Models, Animal Genome Phenotype Phylogeny Polymorphism, Single Nucleotide Rats / classification* Rats / genetics* Rats, Inbred Strains |
| IF | 38.637 |
| 引用数 | 102 |
| WOS 分野 | BIOCHEMISTRY & MOLECULAR BIOLOGY CELL BIOLOGY |
| オルトメトリクス指標 |
オルトメトリクス指標項目
|
| 最多言及媒体 | X(Twitter) |
| 各媒体での言及数の合計 | 48 |
| 過去6か月間でのオルトメトリクス指標の変動値 | 0.0 |
| リソース情報 | |
| 遺伝子材料 | Rat BAC RNB1 |
| ラット | LE/Stm(strainID=265) |