論文 - 詳細
| RRC ID | 37131 |
|---|---|
| 著者 | Shimura Y, Hirose Y, Misawa N, Osana Y, Katoh H, Yamaguchi H, Kawachi M. |
| タイトル | Comparison of the terrestrial cyanobacterium Leptolyngbya sp. NIES-2104 and the freshwater Leptolyngbya boryana PCC 6306 genomes. |
| ジャーナル | DNA Res |
| Abstract |
The cyanobacterial genus Leptolyngbya is widely distributed throughout terrestrial environments and freshwater. Because environmental factors, such as oxygen level, available water content, and light intensity, vary between soil surface and water bodies, terrestrial Leptolyngbya should have genomic differences with freshwater species to adapt to a land habitat. To study the genomic features of Leptolyngbya species, we determined the complete genome sequence of the terrestrial strain Leptolyngbya sp. NIES-2104 and compared it with that of the near-complete sequence of the freshwater Leptolyngbya boryana PCC 6306. The greatest differences between these two strains were the presence or absence of a nitrogen fixation gene cluster for anaerobic nitrogen fixation and several genes for tetrapyrrole synthesis, which can operate under micro-oxic conditions. These differences might reflect differences in oxygen levels where these strains live. Both strains have the genes for trehalose biosynthesis, but only Leptolyngbya sp. NIES-2104 has genetic capacity to produce a mycosporine-like amino acid, mycosporine-glycine. Mycosporine-glycine has an antioxidant action, which may contribute to adaptation to terrestrial conditions. These features of the genomes yielded additional insights into the classification and physiological characteristics of these strains. |
| 巻・号 | 22(6) |
| ページ | 403-12 |
| 公開日 | 2015-12-1 |
| DOI | 10.1093/dnares/dsv022 |
| PII | dsv022 |
| PMID | 26494835 |
| PMC | PMC4675709 |
| MeSH | Cyanobacteria / classification Cyanobacteria / genetics* Fresh Water / microbiology* Genome, Bacterial* Nitrogen Fixation / genetics Phylogeny Trehalose / genetics |
| IF | 4.009 |
| 引用数 | 18 |
| WOS 分野 | GENETICS & HEREDITY |
| オルトメトリクス指標 |
オルトメトリクス指標項目
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| 最多言及媒体 | X(Twitter) |
| 各媒体での言及数の合計 | 1 |
| 過去6か月間でのオルトメトリクス指標の変動値 | 0.0 |
| リソース情報 | |
| 藻類 | NIES-2104 |