RRC ID 40710
Author Romanenko LA, Tanaka N, Svetashev VI, Mikhailov VV.
Title Sphingorhabdus pacificus sp. nov., isolated from sandy sediments of the Sea of Japan seashore.
Journal Arch Microbiol
Abstract An aerobic, Gram-negative, yellow-pigmented, non-motile rod-shaped bacterium designated KMM 9574(T) was isolated from a sand sediment sample collected from the Sea of Japan seashore. Comparative 16S rRNA gene sequence analysis showed that strain KMM 9574(T) belonged to the genus Sphingorhabdus sharing a highest sequence similarity to Sphingorhabdus marina JCM 14161(T) 96.8 %. Strain KMM 9574(T) was characterized by the major ubiquinone Q-10, and by the predominance of C(18:1) ω7c, C(16:0) 2-OH, C(16:1) ω7c, C(17:1), followed by C(15:0) 2-OH and C(14:0) 2-OH in its fatty acid profile. Polar lipids consisted of phosphatidylcholine, sphingoglycolipid, phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, an unknown phospholipid, and an unknown lipid. The DNA G+C content was 56.5 mol %. Based on phylogenetic analysis and distinctive phenotypic characteristics, strain 9574(T) is concluded to represent a novel species of the genus Sphingorhabdus, for which the name Sphingorhabdus pacificus sp. nov., is proposed. The type strain of the species is strain KMM 9574(T) (= NRIC 0922(T) = JCM 30177(T)).
Volume 197(2)
Pages 147-53
Published 2015-3-1
DOI 10.1007/s00203-014-1033-8
PMID 25227995
MeSH Base Composition Fatty Acids / analysis Geologic Sediments / microbiology* Lipids / analysis Molecular Sequence Data Oceans and Seas Phospholipids / analysis Phylogeny* RNA, Ribosomal, 16S / genetics Russia Species Specificity Sphingomonadaceae / chemistry Sphingomonadaceae / classification Sphingomonadaceae / genetics Sphingomonadaceae / isolation & purification Sphingomonadaceae / physiology*
IF 1.884
Times Cited 7
WOS Category MICROBIOLOGY
Resource
General Microbes JCM 30177 JCM 14161 JCM 14162