RRC ID 42528
Author Fujii G, Nakamura Y, Tsukamoto D, Ito M, Shiba T, Takamatsu N.
Title CpG methylation at the USF-binding site is important for the liver-specific transcription of the chipmunk HP-27 gene.
Journal Biochem. J.
Abstract The chipmunk hibernation-specific HP-27 gene is expressed specifically in the liver and has a CpG-poor promoter. To reveal how the liver-specific transcription of the HP-27 gene is regulated, we performed yeast one-hybrid screening of a chipmunk liver cDNA library. A 5'-flanking sequence of the HP-27 gene, extending from -170 to -140 and containing an E-box (5'-CACGTG-3'), is essential for the liver-specific transcription of HP-27. We used this sequence as bait and found that a ubiquitously expressed transcription factor, USF (upstream stimulatory factor), bound to the E-box. In COS-7 cells, USF activated transcription from the HP-27 gene promoter. We then used bisulphite genomic sequencing to analyse the methylation status of the four CpG dinucleotides that lie in the 5'-flanking sequence of the HP-27 gene up to -450, to investigate how the ubiquitously expressed USF activates transcription of the HP-27 gene only in the liver, while its transcription is repressed elsewhere. The only difference in methylation in the tissues tested was in the CpG dinucleotide in the USF-binding site, which was hypomethylated in the liver, but highly methylated in the kidney and heart. The specific methylation of the CpG dinucleotide at the USF-binding site impeded both the binding of USF and its transcriptional activation of the HP-27 gene. Chromatin immunoprecipitation using anti-USF antibodies revealed that USF bound to the HP-27 gene promoter in the liver, but not in the kidney or heart. Thus CpG methylation at the USF-binding site functions in establishing and maintaining tissue-specific transcription from the CpG-poor HP-27 gene promoter.
Volume 395(1)
Pages 203-9
Published 2006-4-1
DOI 10.1042/BJ20051802
PII BJ20051802
PMID 16396632
PMC PMC1409699
MeSH Animals Binding Sites / genetics Blood Proteins / genetics* COS Cells Cells, Cultured Cercopithecus aethiops CpG Islands / genetics* DNA Methylation* DNA-Binding Proteins / metabolism Exons / genetics Liver / metabolism* Organ Specificity Promoter Regions, Genetic / genetics Response Elements / genetics Sciuridae / genetics* Transcription, Genetic / genetics* Upstream Stimulatory Factors / metabolism*
IF 3.857
Times Cited 30
WOS Category BIOCHEMISTRY & MOLECULAR BIOLOGY
Resource
Human and Animal Cells