論文 - 詳細
| RRC ID | 4675 |
|---|---|
| 著者 | Sato S, Nakamura Y, Kaneko T, Asamizu E, Kato T, Nakao M, Sasamoto S, Watanabe A, Ono A, Kawashima K, Fujishiro T, Katoh M, Kohara M, Kishida Y, Minami C, Nakayama S, Nakazaki N, Shimizu Y, Shinpo S, Takahashi C, Wada T, Yamada M, Ohmido N, Hayashi M, Fukui K, Baba T, Nakamichi T, Mori H, Tabata S. |
| タイトル | Genome structure of the legume, Lotus japonicus. |
| ジャーナル | DNA Res |
| Abstract |
The legume Lotus japonicus has been widely used as a model system to investigate the genetic background of legume-specific phenomena such as symbiotic nitrogen fixation. Here, we report structural features of the L. japonicus genome. The 315.1-Mb sequences determined in this and previous studies correspond to 67% of the genome (472 Mb), and are likely to cover 91.3% of the gene space. Linkage mapping anchored 130-Mb sequences onto the six linkage groups. A total of 10,951 complete and 19,848 partial structures of protein-encoding genes were assigned to the genome. Comparative analysis of these genes revealed the expansion of several functional domains and gene families that are characteristic of L. japonicus. Synteny analysis detected traces of whole-genome duplication and the presence of synteny blocks with other plant genomes to various degrees. This study provides the first opportunity to look into the complex and unique genetic system of legumes. |
| 巻・号 | 15(4) |
| ページ | 227-39 |
| 公開日 | 2008-8-1 |
| DOI | 10.1093/dnares/dsn008 |
| PII | dsn008 |
| PMID | 18511435 |
| PMC | PMC2575887 |
| MeSH | Chromosome Mapping DNA, Plant Gene Duplication Genes, Plant Genome, Plant* In Situ Hybridization, Fluorescence Lotus / genetics* Plant Proteins / genetics Plant Proteins / metabolism Repetitive Sequences, Nucleic Acid Sequence Analysis, DNA Synteny |
| IF | 4.009 |
| 引用数 | 443 |
| WOS 分野 | GENETICS & HEREDITY |
| オルトメトリクス指標 |
オルトメトリクス指標項目
|
| 最多言及媒体 | Wikipedia |
| 各媒体での言及数の合計 | 15 |
| 過去6か月間でのオルトメトリクス指標の変動値 | 0.0 |
| リソース情報 | |
| ミヤコグサ・ダイズ | Miyakojima MG-20 |