| RRC ID |
48468
|
| 著者 |
Lim SK, Kim JY, Song HS, Kwon MS, Lee J, Oh YJ, Nam YD, Seo MJ, Lee DG, Choi JS, Yoon C, Sohn E, Rahman MA, Roh SW, Choi HJ.
|
| タイトル |
Genomic Analysis of the Extremely Halophilic Archaeon Halobacterium noricense CBA1132 Isolated from Solar Salt That Is an Essential Material for Fermented Foods.
|
| ジャーナル |
J Microbiol Biotechnol
|
| Abstract |
The extremely halophilic archaeon Halobacterium noricense is a member of the genus Halobacterium. Strain CBA1132 (= KCCM 43183, JCM 31150) was isolated from solar salt. The genome of strain CBA1132 assembled with 4 contigs, including three rRNA genes, 44 tRNA genes, and 3,208 open reading frames. Strain CBA1132 had nine putative CRISPRs and the genome contained genes encoding metal resistance determinants: copper-translocating P-type ATPase (CtpA), arsenical pump-driving ATPase (ArsA), arsenate reductase (ArsC), and arsenical resistance operon repressor (ArsR). Strain CBA1132 was related to Halobacterium noricense, with 99.2% 16S rRNA gene sequence similarity. Based on the comparative genomic analysis, strain CBA1132 has distinctly evolved; moreover, essential genes related to nitrogen metabolism were only detected in the genome of strain CBA1132 among the reported genomes in the genus Halobacterium. This genome sequence of Halobacterium noricense CBA1132 may be of use in future molecular biological studies.
|
| 巻・号 |
26(8)
|
| ページ |
1375-82
|
| 公開日 |
2016-8-28
|
| DOI |
10.4014/jmb.1603.03010
|
| PII |
10.4014/jmb.1603.03010
|
| PMID |
27160574
|
| MeSH |
Base Composition
Base Sequence
Clustered Regularly Interspaced Short Palindromic Repeats
DNA, Archaeal / genetics
Fermentation
Genes, Archaeal
Genome, Archaeal*
Genomics
Halobacterium / genetics*
Halobacterium / isolation & purification
Halobacterium / physiology
Nitrogen / metabolism
Phylogeny
RNA, Ribosomal, 16S
Sequence Analysis, DNA
Sodium Chloride* / metabolism
|
| IF |
1.992
|
| 引用数 |
1
|
|
WOS 分野
|
BIOTECHNOLOGY & APPLIED MICROBIOLOGY
MICROBIOLOGY
|
| リソース情報 |
| 一般微生物 |
JCM 31150 |
