Reference - Detail
| RRC ID | 50779 |
|---|---|
| Author | Shin S, Kahng HY. |
| Title | Cyclobacterium sediminis sp. nov. isolated from a sea cucumber aquaculture farm and emended description of the genus Cyclobacterium. |
| Journal | J Microbiol |
| Abstract |
An aerobic, Gram-negative bacterium, designated strain SD70T, was isolated from sea cucumber aquaculture farm sediment in Taean, Korea, and its taxonomic status was established by undertaking a polyphasic study. Cells of strain SD70T were non-motile, catalase-, and oxidase-positive, non-spore-forming, and horseshoe-shaped. Optimal growth was observed under 25-30°C, pH 7.0-8.0, and 3.0-5.0% (w/v) NaCl conditions. Phylogenetic analyses based on 16S rRNA gene sequences revealed that strain SD70T fell within an evolutionary group comprising species of the genus Cyclobacterium. Strain SD70T shared 92.1-98.5% 16S rRNA sequence similarity values with the type strains of species of the genus Cyclobacterium. Relatively low levels of DNA-DNA relatedness were found between strain SD70T and C. marinum DSM 745T (40.2%) and C. amurskyense KMM 6143T (15.8%). The predominant cellular fatty acids were iso-C15:0 (32.1%), and anteiso-C15:0 (9.1%). Menaquinone MK-7 was the only respiratory quinone. The G+C content of the genomic DNA was 36 mol%. The polar lipids were phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, and seven unidentified lipids. On the basis of phenotypic and genotypic data, strain SD70T represents a novel species of the genus Cyclobacterium, for which the name Cyclobacterium sediminis sp. nov. is proposed. An emended description of the genus Cyclobacterium is also provided. |
| Volume | 55(2) |
| Pages | 90-95 |
| Published | 2017-2-1 |
| DOI | 10.1007/s12275-017-6484-6 |
| PII | 10.1007/s12275-017-6484-6 |
| PMID | 28120194 |
| MeSH | Animals Aquaculture Bacterial Typing Techniques Bacteroidetes / classification* Bacteroidetes / genetics Bacteroidetes / isolation & purification* Bacteroidetes / metabolism Base Composition DNA, Bacterial / genetics Fatty Acids / analysis Geologic Sediments / microbiology Phylogeny Republic of Korea Sea Cucumbers / microbiology* Sequence Analysis, DNA Vitamin K 2 / analysis |
| IF | 2.845 |
| Times Cited | 4 |
| Altmetric score |
オルトメトリクス指標項目
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| The most frequently cited source | Wikipedia |
| Total number of mentions | 1 |
| Altmetric score changes over past 6months | 0.0 |
| Resource | |
| General Microbes | JCM 30860 |