RRC ID 59360
著者 Jeong J, Kim H, Choi J.
タイトル In Silico Molecular Docking and In Vivo Validation with Caenorhabditis elegans to Discover Molecular Initiating Events in Adverse Outcome Pathway Framework: Case Study on Endocrine-Disrupting Chemicals with Estrogen and Androgen Receptors.
ジャーナル Int J Mol Sci
Abstract Molecular docking is used to analyze structural complexes of a target with its ligand for understanding the chemical and structural basis of target specificity. This method has the potential to be applied for discovering molecular initiating events (MIEs) in the Adverse Outcome Pathway framework. In this study, we aimed to develop in silico⁻in vivo combined approach as a tool for identifying potential MIEs. We used environmental chemicals from Tox21 database to identify potential endocrine-disrupting chemicals (EDCs) through molecular docking simulation, using estrogen receptor (ER), androgen receptor (AR) and their homology models in the nematode Caenorhabditis elegans (NHR-14 and NHR-69, respectively). In vivo validation was conducted on the selected EDCs with C. elegans reproductive toxicity assay using wildtype N2, nhr-14, and nhr-69 loss-of-function mutant strains. The chemicals showed high binding affinity to tested receptors and showed the high in vivo reproductive toxicity, and this was further confirmed using the mutant strains. The present study demonstrates that the binding affinity from the molecular docking potentially correlates with in vivo toxicity. These results prove that our in silico⁻in vivo combined approach has the potential to be applied for identifying MIEs. This study also suggests the potential of C. elegans as useful in the in vivo model for validating the in silico approach.
巻・号 20(5)
公開日 2019-3-10
DOI 10.3390/ijms20051209
PII ijms20051209
PMID 30857347
PMC PMC6429066
MeSH Animals Binding Sites Caenorhabditis elegans Caenorhabditis elegans Proteins / metabolism Endocrine Disruptors / chemistry Endocrine Disruptors / pharmacology* Endocrine Disruptors / toxicity Molecular Docking Simulation* Protein Binding Receptors, Androgen / chemistry Receptors, Androgen / metabolism* Receptors, Cytoplasmic and Nuclear / metabolism Receptors, Estrogen / chemistry Receptors, Estrogen / metabolism* Reproduction / drug effects
IF 4.183
引用数 2
リソース情報
線虫 tm1473