| RRC ID |
59812
|
| 著者 |
Tamura T, Ohji S, Ichikawa N, Hosoyama A, Yamazoe A, Hamada M, Komaki H, Shibata C, Matsuzawa T, Gonoi T, Suzuki KI, Fujita N.
|
| タイトル |
Reclassification of Nocardia species based on whole genome sequence and associated phenotypic data.
|
| ジャーナル |
J Antibiot (Tokyo)
|
| Abstract |
Type strains of 72 validated Nocardia species were phylogenetically analyzed based on the multilocus sequence analysis (MLSA) concatenated atpD-groL1-groL2-recA-rpoA-secY-sodA-ychF. Furthermore, their similarity based on digital DNA-DNA hybridization (dDDH) was calculated. Nocardia soli, Nocardia cummidelens and Nocardia salmonicida, Nocardia nova and Nocardia elegans, Nocardia exalbida and Nocardia gamkensis, and Nocardia coubleae and Nocardia ignorata formed coherent clades, respectively. Moreover, each set showed over 70% relatedness by dDDH and shared common phenotypic characteristics. Therefore, we propose a reclassification of Nocardia soli and Nocardia cummidelens as a later heterotypic synonym of Nocardia salmonicida, Nocardia elegans as a later heterotypic synonym of Nocardia nova, Nocardia gamkensis as a later heterotypic synonym of Nocardia exalbida, and Nocardia coubleae as a later heterotypic synonym of Nocardia ignorata.
|
| 巻・号 |
71(7)
|
| ページ |
633-641
|
| 公開日 |
2018-7-1
|
| DOI |
10.1038/s41429-018-0043-1
|
| PII |
10.1038/s41429-018-0043-1
|
| PMID |
29618770
|
| MeSH |
Bacterial Typing Techniques
DNA, Bacterial / analysis
DNA, Bacterial / genetics
Genome, Bacterial / genetics
Genotype
Multilocus Sequence Typing
Nocardia / classification*
Nocardia / genetics*
Phenotype
Phylogeny
Whole Genome Sequencing
|
| IF |
2.446
|
| 引用数 |
4
|
| リソース情報 |
| 病原真核微生物 |
病原放線菌：NBRC 100128 = IFM 0092, NBRC 100130 = IFM 0265, NBRC 100131 = IFM 0330, NBRC 15532 = IFM 1015, NBRC 100429 = IFM 0372, NBRC 100660 = IFM 0803, NBRC 100136 = IFM 0784, |
