RRC ID 63678
著者 Danoy M, Poulain S, Koui Y, Tauran Y, Scheidecker B, Kido T, Miyajima A, Sakai Y, Plessy C, Leclerc E.
タイトル Transcriptome profiling of hiPSC-derived LSECs with nanoCAGE.
ジャーナル Mol Omics
Abstract Liver Sinusoidal Endothelial Cells (LSECs) are an important component of the liver as they compose the microvasculature which allows the supply of oxygen, blood, and nutrients. However, maintenance of these cells in vitro remains challenging as they tend to rapidly lose some of their characteristics such as fenestration or as their immortalized counterparts present poor characteristics. In this work, human induced pluripotent stem cells (hiPSCs) have been differentiated toward an LSEC phenotype. After differentiation, the RNA quantification allowed demonstration of high expression of specific vascular markers (CD31, CD144, and STAB2). Immunostaining performed on the cells was found to be positive for both Stabilin-1 and Stabilin-2. Whole transcriptome analysis performed with the nanoCAGE method further confirmed the overall vascular commitment of the cells. The gene expression profile revealed the upregulation of the APLN, LYVE1, VWF, ESAM and ANGPT2 genes while VEGFA appeared to be downregulated. Analysis of promoter motif activities highlighted several transcription factors (TFs) of interest in LSECs (IRF2, ERG, MEIS2, SPI1, IRF7, WRNIP1, HIC2, NFIX_NFIB, BATF, and PATZ1). Based on this investigation, we compiled the regulatory network involving the relevant TFs, their target genes as well as their related signaling pathways. The proposed hiPSC-derived LSEC model and its regulatory network were then confirmed by comparing the experimental data to primary human LSEC reference datasets. Thus, the presented model appears as a promising tool to generate more complex in vitro liver multi-cellular tissues.
巻・号 16(2)
ページ 138-146
公開日 2020-4-1
DOI 10.1039/c9mo00135b
PMID 31989141
MeSH Cell Differentiation Cells, Cultured Endothelial Cells / chemistry Endothelial Cells / cytology Exome Sequencing Gene Expression Profiling / methods* Gene Regulatory Networks Humans Induced Pluripotent Stem Cells / chemistry Induced Pluripotent Stem Cells / cytology* Liver / chemistry Liver / cytology* Nanotechnology
IF 2.273
リソース情報
ヒト・動物細胞 454E2(HPS0077)