RRC ID 66287
Author Cho ES, Park SL, Nam YD, Lim SI, Kim DY, Jung DH, Kim JH, Seo MJ.
Title Hymenobacter lutimineralis sp. nov., belonging to the family Hymenobacteraceae, isolated from zeolite.
Journal Antonie Van Leeuwenhoek
Abstract A red-pigmented bacterial strain, designated KIGAM108T, within the family Hymenobacteraceae was isolated from zeolite in the Gampo-41 mine of the Gyeongju, Republic of Korea. This strain was a Gram-negative, strictly aerobic, non-spore forming, rod-shaped bacterium. Phylogenetic analysis of the 16S rRNA gene sequence of strain KIGAM108T found that it was related to the genus Hymenobacter, with similarities of 96.6, 96.4, 95.5, and 95.0% to H. fastidiosus VUG-A124T, H. algoricola VUG-A23aT, H. crusticola MIMBbqt21T, and H. daecheongensis DSM 21074T, respectively. Strain KIGAM108T grew in the presence of 0-0.5% (w/v) NaCl at 4-37 °C and pH 6.0-10.0. This isolate contained MK-7 as a respiratory quinone. The polar lipids of strain KIGAM108T were identified as phosphatidylethanolamine, two unidentified aminophospholipids, one unidentified phospholipid and five unidentified lipids. The major fatty acids profile showed summed feature 3 (C16:1ω6c and/or C16:1ω7c) (22.3%), anteiso-C15:0 (17.1%), C16:1ω5c (13.3%), and iso-C15:0 (11.0%). The genomic DNA G + C content was 60.0 mol%. Based on the polyphasic taxonomic data, strain KIGAM108T is considered to represent a novel species of the genus Hymenobacter, for which the name Hymenobacter lutimineralis sp. nov. is proposed. The type strain is KIGAM108T (=KCTC 72263T =JCM 33444T).
Volume 113(7)
Pages 947-957
Published 2020-7-1
DOI 10.1007/s10482-020-01402-9
PII 10.1007/s10482-020-01402-9
PMID 32222863
MeSH Bacterial Typing Techniques Bacteroidetes / classification* Bacteroidetes / genetics Base Composition Cytophagaceae / classification* Cytophagaceae / genetics Cytophagaceae / isolation & purification* Cytophagaceae / physiology DNA, Bacterial / genetics Fatty Acids / analysis Phosphatidylethanolamines Phospholipids / analysis Phylogeny* RNA, Ribosomal, 16S / genetics Republic of Korea Sequence Analysis, DNA Soil Microbiology* Vitamin K 2 Whole Genome Sequencing Zeolites*
Resource
General Microbes JCM33444 JCM17224 JCM17214