RRC ID 66316
Author Liu L, Shi S, Liang L, Xu L, Chi M, Zhang X, Li L.
Title Neorhizobium lilium sp. nov., an endophytic bacterium isolated from Lilium pumilum bulbs in Hebei province.
Journal Arch Microbiol
Abstract A novel gram-negative, aerobic, non-spore-forming, rod-shaped and non-nitrogen fixing bacterium named strain 24NRT was isolated from wild Lilium pumilum bulbs in Fuping, Baoding City, Hebei province, PR China. The 16S rRNA gene sequences of strains 24NRT showed the highest similarity to Neorhizobium alkalisoli DSM 21826T (98.5%) and N. galegae HAMBI 540T (98.1%). Phylogenetic analysis based on 16S rRNA genes and multilocus sequence analysis (MLSA) based on the partial sequences of atpD-glnII-glnA-recA-ropD-thrC housekeeping genes both indicated that strain 24NRT is a member of the genus Neorhizobium. The average nucleotide identity between the genome sequence of strain 24NRT and that of the isolate N. alkalisoli DSM 21826T was 83.1%, and the digital DNA-DNA hybridization was 20.1%. The G+C content of strain 24NRT was 60.3 mol %. The major cellular fatty acids were summed feature 8 (C18:1ω7c and/or C18:1ω6c) and C19:0 cyclo ω8c. Based on phenotypic, phylogenetic, and genotypic data, strain 24NRT is considered to represent a novel species of the genus Neorhizobium, for which the name Neorhizobium lilium sp. nov. is proposed. The type strain is 24NRT (= ACCC 61588T = JCM 33731T).
Volume 202(3)
Pages 609-616
Published 2020-4-1
DOI 10.1007/s00203-019-01774-1
PII 10.1007/s00203-019-01774-1
PMID 31768560
MeSH Bacterial Typing Techniques Base Composition China DNA, Bacterial / genetics Endophytes / classification Endophytes / genetics Endophytes / isolation & purification* Endophytes / metabolism Fatty Acids / chemistry Fatty Acids / metabolism Lilium / microbiology* Multilocus Sequence Typing Nucleic Acid Hybridization Phylogeny Plant Roots / microbiology RNA, Ribosomal, 16S / genetics Rhizobiaceae / classification Rhizobiaceae / genetics Rhizobiaceae / isolation & purification* Rhizobiaceae / metabolism Sequence Analysis, DNA
Resource
General Microbes JCM33731