| RRC ID |
75528
|
| 著者 |
Cao X, Yi Z, Qiu X, Wu H, Yu L, Tang X.
|
| タイトル |
Genomic analysis of Shewanella eurypsychrophilus YLB-09 reveals backgrounds related to its deep sea environment adaptation.
|
| ジャーナル |
Mar Genomics
|
| Abstract |
Shewanella eurypsychrophilus YLB-09 is a psychrophilic and piezotolerant bacterium that was isolated from 2699 m deep sea sediments of the Southwest Indian Ocean. The complete genome sequence of the strain Shewanella eurypsychrophilus YLB-09 was analyzed. The genome of Shewanella eurypsychrophilus YLB-09 contained one single circular chromosome 6,225,487 base pairs with a 43.6 mol% G + C content of 52 ribosomal RNA genes and 5124 protein-coding genes. YLB-09 has the largest number of genes related to energy production and conversion among 22 available complete genomes of Shewanella genus. Meanwhile， a large quantity of genes encoding flagellum/fimbrial-related proteins and two major secondary metabolic gene clusters were found in YLB-09. These data could provide insights into the mechanism of this strain in adapting to deep sea extreme environments.
|
| 巻・号 |
64
|
| ページ |
100956
|
| 公開日 |
2022-8-1
|
| DOI |
10.1016/j.margen.2022.100956
|
| PII |
S1874-7787(22)00034-4
|
| PMID |
35811106
|
| MeSH |
DNA, Bacterial / genetics
Genomics
Geologic Sediments / microbiology
Phylogeny
RNA, Ribosomal, 16S / genetics
Seawater / microbiology
Sequence Analysis, DNA
Shewanella* / genetics
|
| リソース情報 |
| 一般微生物 |
JCM 33200 |
