RRC ID 80083
Author Ihara F, Kyan H, Takashima Y, Ono F, Hayashi K, Matsuo T, Igarashi M, Nishikawa Y, Hikosaka K, Sakamoto H, Nakamura S, Motooka D, Yamauchi K, Ichikawa-Seki M, Fukumoto S, Sasaki M, Ikadai H, Kusakisako K, Ohari Y, Yoshida A, Sasai M, Grigg ME, Yamamoto M.
Title Far-East Asian Toxoplasma isolates share ancestry with North and South/Central American recombinant lineages.
Journal Nat Commun
Abstract Toxoplasma gondii is a global protozoan pathogen. Clonal lineages predominate in Europe, North America, Africa, and China, whereas highly recombinant parasites are endemic in South/Central America. Far East Asian T. gondii isolates are not included in current global population genetic structure analyses at WGS resolution. Here we report a genome-wide population study that compared eight Japanese and two Chinese isolates against representative worldwide T. gondii genomes using POPSICLE, a novel population structure analyzing software. Also included were 7 genomes resurrected from non-viable isolates by target enrichment sequencing. Visualization of the genome structure by POPSICLE shows a mixture of Chinese haplogroup (HG) 13 haploblocks introgressed within the genomes of Japanese HG2 and North American HG12. Furthermore, two ancestral lineages were identified in the Japanese strains; one lineage shares a common ancestor with HG11 found in both Japanese strains and North American HG12. The other ancestral lineage, found in T. gondii isolates from a small island in Japan, is admixed with genetically diversified South/Central American strains. Taken together, this study suggests multiple ancestral links between Far East Asian and American T. gondii strains and provides insight into the transmission history of this cosmopolitan organism.
Volume 15(1)
Pages 4278
Published 2024-5-22
DOI 10.1038/s41467-024-47625-6
PII 10.1038/s41467-024-47625-6
PMID 38778039
PMC PMC11111807
MeSH Central America China Genetic Variation Genome, Protozoan* / genetics Haplotypes Humans Japan North America Phylogeny* Recombination, Genetic Toxoplasma* / classification Toxoplasma* / genetics Toxoplasmosis / parasitology
IF 12.121
Resource
Human and Animal Cells NB1RGB(RCB0222)