RRC ID 84718
Author Wan J, Zhou Y, Sun H, Li H, Yao Q, Zhu H.
Title Sinomonas terricola sp. nov., a plant-beneficial bacterium isolated from litchi rhizosphere soil in Guangdong, China.
Journal Int J Syst Evol Microbiol
Abstract A novel plant-beneficial bacterium strain, designated as JGH33T, which inhibited Peronophythora litchii sporangia germination, was isolated on Reasoner's 2A medium from a litchi rhizosphere soil sample collected in Gaozhou City, Guangdong Province, PR China. Cells of strain JGH33T were Gram-stain-positive, aerobic, non-motile, bent rods. The strain grew optimally at 30-37 °C and pH 6.0-8.0. Sequence similarity analysis based on 16S rRNA genes indicated that strain JGH33T exhibited highest sequence similarity to Sinomonas albida LC13T (99.2 %). The genomic DNA G+C content of the isolate was 69.1 mol%. The genome of JGH33T was 4.7 Mbp in size with the average nucleotide identity value of 83.45 % to the most related reference strains, which is lower than the species delineation threshold of 95 %. The digital DNA-DNA hybridization of the isolate resulted in a relatedness value of 24.9 % with its closest neighbour. The predominant respiratory quinone of JGH33T was MK-9(H2). The major fatty acids were C15 : 0 anteiso (43.4 %), C16 : 0 iso (19.1 %) and C17 : 0 anteiso (19.3 %), and the featured component was C18 : 3 ω6c (1.01 %). The polar lipid composition of strain JGH33T included diphosphatidylglycerol, phosphatidylglycerol, dimannosylglyceride, phosphatidylinositol and glycolipids. On the basis of polyphasic taxonomy analyses data, strain JGH33T represents a novel species of the genus Sinomonas, for which the name Sinomonas terricola sp. nov. is proposed, with JGH33T (=JCM 35868T=GDMCC 1.3730T) as the type strain.
Volume 74(5)
Published 2024-5-1
DOI 10.1099/ijsem.0.006375
PMID 38728074
MeSH Bacterial Typing Techniques* Base Composition* China DNA, Bacterial* / genetics Fatty Acids* / analysis Litchi* / microbiology Nucleic Acid Hybridization* Phospholipids / analysis Phylogeny* RNA, Ribosomal, 16S* / genetics Rhizosphere* Sequence Analysis, DNA* Soil Microbiology* Vitamin K 2* / analogs & derivatives Vitamin K 2* / analysis
Resource
General Microbes JCM35868