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  • 19 Hits
  • Search Condition : Filter (MeSH = Molecular Dynamics Simulation)
Species Resource Title
Human and Animal Cells MC3T3-E1(RCB1126) Synthesis and characterization of water-soluble silk peptides and recombinant silk protein containing polyalanine, the integrin binding site, and two glutamic acids at each terminal site as a possible candidate for use in bone repair materials.
Chicken / Quail Molecular basis of egg coat cross-linking sheds light on ZP1-associated female infertility.
Human and Animal Cells NCC-RbC-51(RCB2206) Designing and enhancing the antifungal activity of corneal specific cell penetrating peptide using gelatin hydrogel delivery system.
Human and Animal Cells COS-1(RCB0143) Dual conformation of the ligand induces the partial agonistic activity of retinoid X receptor α (RXRα).
C.elegans tm403 , tm1962 The plakin domain of C. elegans VAB-10/plectin acts as a hub in a mechanotransduction pathway to promote morphogenesis.
C.elegans NA The neural γ2α1β2α1β2 gamma amino butyric acid ion channel receptor: structural analysis of the effects of the ivermectin molecule and disulfide bridges.
Prokaryotes E. coli Keio collection , ASKA (-) collection Subunit interactions as mediated by "non-interface" residues in living cells for multiple homo-oligomeric proteins.
DNA material CP525-S522D (RDB17507) , CP525-4D (RDB17508) , GST-CP525 (RDB17509) Structural Insights into the Altering Function of CRMP2 by Phosphorylation.
Silkworms d17 In vitro screening for inhibitor of cloned Drosophila melanogaster tyramine-β-hydroxylase and docking studies.
General Microbes JCM 12802 A key residue for the substrate affinity enhancement of a thermophilic endo-polygalacturonase revealed by computational design.
Drosophila 7873R-2 The major β-catenin/E-cadherin junctional binding site is a primary molecular mechano-transductor of differentiation in vivo.
DNA material pHisGST CKI delta (RDB15964) , pHisGST CKI homolog 1 (RDB15965) Temperature-Sensitive Substrate and Product Binding Underlie Temperature-Compensated Phosphorylation in the Clock.
C.elegans tm3968 The ubiquitin ligase Ubr4 controls stability of podocin/MEC-2 supercomplexes.
Arabidopsis / Cultured plant cells, genes pda02804 , pda06312 Molecular dynamics simulations and CD spectroscopy reveal hydration-induced unfolding of the intrinsically disordered LEA proteins COR15A and COR15B from Arabidopsis thaliana.
DNA material pENTER-EGFR wild-type (RDB15488) , pENTER-EGFR Del19 (RDB15489) , pENTER-EGFR T790M/del19 (RDB15490) , pENTER-EGFR C797S/del19 (RDB15491) , pENTER-EGFR C797S/T790M/del19 (RDB15492) , pENTER-EGFR L858R (RDB15493) , pENTER-EGFR T790M/L858R (RDB15494) , pENTER-EGFR C797S/L858R (RDB15495) , pENTER-EGFR C797S/T790M/L858R (RDB15496). Brigatinib combined with anti-EGFR antibody overcomes osimertinib resistance in EGFR-mutated non-small-cell lung cancer.
Arabidopsis / Cultured plant cells, genes pda18258 Combined Experimental and Computational Approaches Reveal Distinct pH Dependence of Pectin Methylesterase Inhibitors.
C.elegans tm321 , tm237 Time-lapse imaging and cell-specific expression profiling reveal dynamic branching and molecular determinants of a multi-dendritic nociceptor in C. elegans.
Prokaryotes E. coli ME9062(BW25113) Distinctive contributions of the ribosomal P-site elements m2G966, m5C967 and the C-terminal tail of the S9 protein in the fidelity of initiation of translation in Escherichia coli.
DNA material , General Microbes Genomic DNA of Geobacillus kaustophilus JCM 20319T (JGD08098) Structural basis for dynamic mechanism of proton-coupled symport by the peptide transporter POT.