論文 - 詳細
| RRC ID | 34185 |
|---|---|
| 著者 | Kook M, Park Y, Yi TH. |
| タイトル | Pedobacter jejuensis sp. nov., isolated from soil of a pine grove, and emended description of the genus Pedobacter. |
| ジャーナル | Int J Syst Evol Microbiol |
| Abstract |
A Gram-stain-negative, strictly aerobic, non-motile, rod-shaped bacterial strain, THG-DR3T, was isolated from soil of a pine grove in Jeju island, Republic of Korea. Strain THG-DR3T grew optimally at 20-25 °C, at pH 7.0-8.0 and in R2A broth without added NaCl. 16S rRNA gene sequence analysis indicated that strain THG-DR3T belongs to the genus Pedobacter. The closest relatives based on 16S rRNA gene sequence similarity were Pedobacter aquatilis AR107T (98.0%), Pedobacter alluvionis NWER-II11T (97.7%), Pedobacter borealis G-1T (97.7%) and Pedobacter ginsengiterrae DCY49T (97.4%). The G+C content of the genomic DNA of strain THG-DR3T was 47.5 mol%. Levels of DNA-DNA relatedness between strain THG-DR3T and its closest phylogenetic neighbours were below 44.7%. The presence of menaquinone 7 and of iso-C15:0 and summed feature 3 (comprising C16:1ω7c and/or C16:1ω6c) as the major fatty acids supported the affiliation of strain THG-DR3T to the genus Pedobacter. The polar lipids of strain THG-DR3T consisted of phosphatidylethanolamine, three unidentified aminophospholipids, five unidentified aminolipids and three unidentified lipids. The results of physiological and biochemical tests allowed the differentiation of strain THG-DR3T from recognized species of the genus Pedobacter. Strain THG-DR3T (=KACC 17172T=JCM 18824T) is proposed as the type strain of a novel species of the genus Pedobacter, Pedobacter jejuensis sp. nov. An emended description of the genus Pedobacter is also proposed. |
| 巻・号 | 64(Pt 5) |
| ページ | 1789-1794 |
| 公開日 | 2014-5-1 |
| DOI | 10.1099/ijs.0.058024-0 |
| PMID | 24573158 |
| MeSH | Bacterial Typing Techniques Base Composition DNA, Bacterial / genetics Fatty Acids / chemistry Molecular Sequence Data Nucleic Acid Hybridization Pedobacter / classification* Pedobacter / genetics Pedobacter / isolation & purification Phosphatidylethanolamines / chemistry Phylogeny* Pinus / microbiology RNA, Ribosomal, 16S / genetics Republic of Korea Sequence Analysis, DNA Soil Microbiology* Vitamin K 2 / analogs & derivatives Vitamin K 2 / chemistry |
| IF | 2.415 |
| 引用数 | 27 |
| WOS 分野 | MICROBIOLOGY |
| オルトメトリクス指標 |
オルトメトリクス指標項目
|
| 最多言及媒体 | Wikipedia |
| 各媒体での言及数の合計 | 2 |
| 過去6か月間でのオルトメトリクス指標の変動値 | 0.0 |
| リソース情報 | |
| 一般微生物 | JCM 18824 |