RRC ID |
3674
|
著者 |
Kawakami S, Ebana K, Nishikawa T, Sato Y, Vaughan DA, Kadowaki K.
|
タイトル |
Genetic variation in the chloroplast genome suggests multiple domestication of cultivated Asian rice (Oryza sativa L.).
|
ジャーナル |
Genome
|
Abstract |
Two hundred and seventy-five accessions of cultivated Asian rice and 44 accessions of AA genome Oryza species were classified into 8 chloroplast (cp) genome types (A-H) based on insertion-deletion events at 3 regions (8K, 57K, and 76K) of the cp genome. The ancestral cp genome type was determined according to the frequency of occurrence in Oryza species and the likely evolution of the variable 57K region of the cp genome. When 2 nucleotide substitutions (AA or TT) were taken into account, these 8 cp types were subdivided into 11 cp types. Most indica cultivars had 1 of 3 cp genome types that were also identified in the wild relatives of rice, O. nivara and O. rufipogon, suggesting that the 3 indica cp types had evolved from distinct gene pools of the O. rufipogon - O. nivara complex. The majority of japonica cultivars had 1 of 3 different cp genome types. One of these 3 was identified in O. rufipogon, suggesting that at least 1 japonica type is derived from O. rufipogon with the same cp genome type. These results provide evidence to support a polyphyletic origin of cultivated Asian rice from at least 4 principal lineages in the O. rufipogon - O. nivara complex.
|
巻・号 |
50(2)
|
ページ |
180-7
|
公開日 |
2007-2-1
|
DOI |
10.1139/g06-139
|
PII |
g06-139
|
PMID |
17546083
|
MeSH |
Base Sequence
Chloroplasts / genetics*
Databases, Genetic
Gene Deletion
Genes, Plant
Genetic Variation*
Genome, Plant*
Models, Genetic
Molecular Sequence Data
Oryza / genetics*
Polymorphism, Genetic
Sequence Analysis, DNA
Sequence Homology, Nucleic Acid
|
IF |
2.037
|
引用数 |
23
|
WOS 分野
|
BIOTECHNOLOGY & APPLIED MICROBIOLOGY
GENETICS & HEREDITY
|
リソース情報 |
イネ |
O. rufipogon
O. barthii
O. glumaepatula
O. longistaminata |