| RRC ID |
3841
|
| Author |
Teranishi C, Yoshida K, Miyashita NT.
|
| Title |
DNA polymorphism in the SUPERWOMAN1 (SPW1) locus of the wild rice Oryza rufipogon and its related species.
|
| Journal |
Genes Genet Syst
|
| Abstract |
The level and pattern of nucleotide variation in the SUPERWOMAN1(SPW1) locus of the wild rice Oriza rufipogon and its related species were analyzed. SPW1 is orthologous to APETELA3(AP3) in Arabidopsis thaliana. The estimated level of nucleotide variation for the entire region (pi = 0.0046) was intermediate among those for other genes of O. rufipogon, although the estimates varied considerably among the SPW1 domains. Complicated haplotype structure was detected, resulting in a high proportion of significant linkage disequilibrium. Deviation from the neutrality was not detected. However, purifying selection was suggested by lack of replacement variation in the MADS-box and I-domain regions, which function as DNA-binding domain. On the other hand, an excess of drastic amino acid changes was detected in the C-domain, as in the AP3 region of A. thaliana. Taken together, these results imply that different types of natural selection are acting among different domains of a single protein. In the phylogenetic tree, O. sativa strains were included in the same cluster of O. rufipogon, supporting the hypothesis that O. rufipogon is the wild ancestor of O. sativa.
|
| Volume |
83(5)
|
| Pages |
403-15
|
| Published |
2008-10-1
|
| DOI |
10.1266/ggs.83.403
|
| PII |
JST.JSTAGE/ggs/83.403
|
| PMID |
19168991
|
| MeSH |
Amino Acid Motifs
Amino Acid Sequence
Arabidopsis / genetics
DNA, Plant / genetics
Evolution, Molecular
Genes, Plant
Genetic Variation
Genome, Plant
Haplotypes
Linkage Disequilibrium
Oryza / genetics*
Phylogeny
Polymorphism, Genetic*
Species Specificity
|
| IF |
0.917
|
| Times Cited |
1
|
|
WOS Category
|
GENETICS & HEREDITY
BIOCHEMISTRY & MOLECULAR BIOLOGY
|
| Resource |
| Rice |
W0107
W0137
W108
W120
W149
W593
W1294
W1962
W1964
W1965
W1972
W2263
W1167
W1627
W1638 |
