RRC ID 40825
Author Lee LH, Azman AS, Zainal N, Yin WF, Mutalib NA, Chan KG.
Title Sinomonas humi sp. nov., an amylolytic actinobacterium isolated from mangrove forest soil.
Journal Int J Syst Evol Microbiol
Abstract Strain MUSC 117(T) was isolated from mangrove soil of the Tanjung Lumpur forest in Pahang, Malaysia. This bacterium was yellowish-white pigmented, Gram-staining-positive, rod-coccus shaped and non-motile. On the basis of 16S rRNA gene sequence, strain MUSC 117(T) exhibited highest sequence similarity to Sinomonas atrocyanea DSM 20127(T) (98.0 %), Sinomonas albida LC13(T) (97.9 %) and Sinomonas soli CW 59(T) (97.8 %), and lower (<97.6 %) sequence similarity to other species of the genus Sinomonas. DNA-DNA hybridization experiments revealed a low level of DNA-DNA relatedness (less than 27 %) between strain MUSC 117(T) and closely related species. Chemotaxonomically, the peptidoglycan type was A3α, containing the amino acids lysine, serine, glycine, alanine, glutamic acid and muramic acid. The whole-cell sugars detected were rhamnose, ribose, glucose, galactose and a smaller amount of mannose. The polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and five unidentified glycolipids. The major fatty acids (>10.0 %) of the cell membrane were anteiso-C15 : 0 (39.4 %), C18 : 1ω7c (17.7 %), anteiso-C17 : 0 (17.2 %) and iso-C16 : 0 (11.4 %). The predominant respiratory quinones detected were MK-9(H2) and MK-9. The DNA G+C content was 67.3 mol%. A comparison of BOX-PCR fingerprints indicated that strain MUSC 117(T) represented a unique DNA profile. Results based on a polyphasic approach showed that strain MUSC 117(T) represents a novel species of the genus Sinomonas, for which the name Sinomonas humi sp. nov. is proposed. The type strain of Sinomonas humi sp. nov. is MUSC 117(T) ( = DSM 29362(T) = MCCC 1K00410(T) = NBRC 110653(T)).
Volume 65(Pt 3)
Pages 996-1002
Published 2015-3-1
DOI 10.1099/ijs.0.000053
PMID 25563924
MeSH Avicennia / microbiology* Bacterial Typing Techniques Base Composition Cell Wall / chemistry DNA, Bacterial / genetics Fatty Acids / chemistry Forests* Glycolipids / chemistry Malaysia Micrococcaceae / classification* Micrococcaceae / genetics Micrococcaceae / isolation & purification Molecular Sequence Data Nucleic Acid Hybridization Peptidoglycan / chemistry Phylogeny* RNA, Ribosomal, 16S / genetics Sequence Analysis, DNA Soil Microbiology*
IF 2.415
Times Cited 7
WOS Category MICROBIOLOGY
Resource
General Microbes JCM 21830 JCM 16034