Reference - Detail
| RRC ID | 55327 |
|---|---|
| Author | Roh SG, Kim MK, Park S, Yun BR, Park J, Kim MJ, Kim YS, Kim SB. |
| Title | Streptacidiphilus pinicola sp. nov., isolated from pine grove soil. |
| Journal | Int J Syst Evol Microbiol |
| Abstract |
A moderately acidophilic actinobacterial strain, designated MMS16-CNU450T, was isolated from pine grove soil, and its taxonomic position was analysed using a polyphasic approach. The isolate showed best growth at 30 °C, pH 6 and 0.5 % (w/v) NaCl. On the basis of 16S rRNA gene sequence similarity, the isolate was assigned to the genus Streptacidiphilus, and the closest species were Streptacidiphilus rugosus AM-16T (sequence similarity, 98.61 %), Streptacidiphilus melanogenes NBRC 103184T (98.53 %), Streptacidiphilus jiangxiensis NBRC 100920T (98.19 %) and Streptacidiphilus anmyonensis NBRC 103185T (98.05 %). The isolate formed a distinct cluster of its own within the Streptacidiphilusclade in the phylogenetic tree. Based on whole-genome comparison between the strain MMS16-CNU450T and the type strains of related species, the orthologous average nucleotide identity and in silico DNA-DNA hybridization values were in the range of 77.9-87.0 and 22.3-32.7 %, respectively. The DNA G+C content of the isolate was 68.6 mol%. The phylogenetic, phenotypic, chemotaxonomic and genomic data supported the affiliation of the strain to Streptacidiphilus, and the name Streptacidiphilus pinicola sp. nov. (type strain, MMS16-CNU450T=KCTC 49008T=JCM 32300T) is proposed accordingly. |
| Volume | 68(9) |
| Pages | 3149-3155 |
| Published | 2018-10-1 |
| DOI | 10.1099/ijsem.0.002957 |
| PMID | 30102143 |
| MeSH | Bacterial Typing Techniques Base Composition DNA, Bacterial / genetics Fatty Acids / chemistry Forests* Nucleic Acid Hybridization Phylogeny* Pinus / microbiology* RNA, Ribosomal, 16S / genetics Republic of Korea Sequence Analysis, DNA Soil Microbiology* Streptomycetaceae / classification* Streptomycetaceae / genetics Streptomycetaceae / isolation & purification |
| IF | 2.166 |
| Times Cited | 2 |
| Altmetric score |
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| The most frequently cited source | X(Twitter) |
| Total number of mentions | 1 |
| Altmetric score changes over past 6months | 0.0 |
| Resource | |
| General Microbes | JCM 32300 |