RRC ID 55414
Author Cui MD, Wang X, Jiang WK, Hu G, Yang ZG, Sun GJ, Zhu SJ, Zhou YD, Hong Q.
Title Pedobacter agrisoli sp. nov., isolated from farmland soil.
Journal Int J Syst Evol Microbiol
Abstract A Gram-stain-negative, aerobic, non-motile, non-spore-forming and rod-shaped bacterium, designated YHM-9T, was isolated from soil in Yangquan, Shanxi Province, PR China. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YHM-9T belonged to the genus Pedobacter and shared the highest similarity (97.4 %) to the type strain Pedobacter lignilitoris W-WS13T. Strain YHM-9T exhibited low DNA-DNA relatedness with P. lignilitoris W-WS13T (21.7±1.3 %). The DNA G+C content was 38.9 mol%. The major fatty acids were iso-C15 : 0, summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c) and iso-C17 : 0 3-OH. The respiratory quinone was MK-7, the major polyamine was sym-homospermidine and the major polar lipids were phosphatidylethanolamine. Based on the morphological, physiological, biochemical and chemotaxonomic characteristics, strain YHM-9T was recognized as a representative of a novel species within the genus Pedobacter, for which the name Pedobacteragrisoli sp. nov. is proposed. The type strain is YHM-9T (=JCM 32093T=CCTCC AB 2017125T).
Volume 68(3)
Pages 886-891
Published 2018-3-1
DOI 10.1099/ijsem.0.002604
PMID 29458546
MeSH Bacterial Typing Techniques Base Composition China DNA, Bacterial / genetics Farms* Fatty Acids / chemistry Nucleic Acid Hybridization Pedobacter / classification* Pedobacter / genetics Pedobacter / isolation & purification Phosphatidylethanolamines / chemistry Phylogeny* RNA, Ribosomal, 16S / genetics Sequence Analysis, DNA Soil Microbiology* Spermidine / analogs & derivatives Spermidine / chemistry Vitamin K 2 / chemistry
IF 2.166
Times Cited 1
Resource
General Microbes JCM 32093