論文 - 詳細
| RRC ID | 60409 |
|---|---|
| 著者 | Chen Y, Zhu S, Lin D, Wang X, Yang J, Chen J. |
| タイトル | Devosia naphthalenivorans sp. nov., isolated from East Pacific Ocean sediment. |
| ジャーナル | Int J Syst Evol Microbiol |
| Abstract |
A Gram-stain-negative bacterium, designated CM5-1T, was isolated from a sediment sample collected from the East Pacific Ocean. 16S rRNA gene sequence analysis revealed that strain CM5-1T belongs to the genus Devosia, with closely related type strains Devosia submarina KMM 9415T (98.6 %), Devosia psychrophilaCr7-05T (98.6 %) and Devosia psychrophilaE84T (98.2 %). Up-to-date bacterial core gene set analysis revealed that strain CM5-1T represents one independent lineage with D. submarina KMM 9415T. The average nucleotide identity values of CM5-1T with D. submarina KMM 9415T and D. psychrophila Cr7-05T are 80.1 and 77.9 %, respectively. In silico DNA-DNA hybridization values between strain CM5-1T and D. submarina KMM 9415T and D. psychrophila Cr7-05T are 23.8 and 21.9 %, respectively. Strain CM5-1T contains diphosphatidylglycerol, phosphatidylglycerol and glycolipid as major polar lipids. The sole isoprenoid quinone is ubiquinone-10, and C18 : 1ω7c and 11-methyl C18 : 1ω7c are the dominant cellular fatty acids. The G+C content of the genomic DNA is 61.4 mol%. Differential phylogenetic distinctiveness and chemotaxonomic differences, together with the phenotypic properties observed in this study, revealed that strain CM5-1T could be differentiated from closely related species. Therefore, we propose strain CM5-1T as a novel species of the genus Devosia, for which the name Devosia naphthalenivorans sp. nov. is suggested. The type strain is CM5-1T (=JCM32509T=CGMCC 1.13553T). |
| 巻・号 | 69(7) |
| ページ | 1974-1979 |
| 公開日 | 2019-7-1 |
| DOI | 10.1099/ijsem.0.003410 |
| PMID | 31046895 |
| MeSH | Bacterial Typing Techniques Base Composition DNA, Bacterial / genetics Fatty Acids / chemistry Geologic Sediments / microbiology* Glycolipids / chemistry Hyphomicrobiaceae / classification* Hyphomicrobiaceae / isolation & purification Nucleic Acid Hybridization Pacific Ocean Phospholipids / chemistry Phylogeny* RNA, Ribosomal, 16S / genetics Seawater / microbiology* Sequence Analysis, DNA Ubiquinone / chemistry |
| IF | 2.166 |
| 引用数 | 0 |
| オルトメトリクス指標 |
オルトメトリクス指標項目
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| 最多言及媒体 | Wikipedia |
| 各媒体での言及数の合計 | 1 |
| 過去6か月間でのオルトメトリクス指標の変動値 | 0.0 |
| リソース情報 | |
| 一般微生物 | JCM32509 JCM18935 |