| RRC ID |
60491
|
| 著者 |
Noh HJ, Baek K, Hwang CY, Shin SC, Hong SG, Lee YM.
|
| タイトル |
Lichenihabitans psoromatis gen. nov., sp. nov., a member of a novel lineage (Lichenihabitantaceae fam. nov.) within the order of Rhizobiales isolated from Antarctic lichen.
|
| ジャーナル |
Int J Syst Evol Microbiol
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| Abstract |
Two Gram-stain-negative, facultative anaerobic chemoheterotrophic, pink-coloured, rod-shaped and non-motile bacterial strains, PAMC 29128 and PAMC 29148T, were isolated from lichen. Phylogenetic analysis based on the 16S rRNA gene sequences revealed that strains PAMC 29128 and PAMC 29148T belong to lichen-associated Rhizobiales-1 (LAR1), an uncultured phylogenetic lineage of the order Rhizobiales and the most closely related genera were Methylocapsa (<93.9 %) and Methylosinus (<93.8 %). The results of phylogenomic and genomic relatedness analyses also showed that strains PAMC 29128 and PAMC 29148T were clearly distinguished from other species in the order Rhizobiales with average nucleotide identity values of <71.4 % and genome-to-genome distance values of <22.7 %. Genomic analysis revealed that strains PAMC 29128 and PAMC 29148T did not contain genes involved in atmospheric nitrogen fixation or utilization of carbon compounds such as methane and methanol. Strains PAMC 29128 and PAMC 29148T were able to utilize certain monosaccharides, disaccharides, sugar alcohols and other organic compounds as a sole carbon source. The major fatty acids (>10 %) were summed feature 8 (C18 : 1 ω7c and/or C18 : 1 ω6c; 33.7-39.7 %), summed feature 3 (C16 : 1 ω7c and/or C 16:1 ω6c; 25.2-25.4 %) and C19 :0 cyclo ω8c (11.9-15.4 %). The major respiratory quinone was Q-10. The genomic DNA G+C contents of PAMC 29128 and PAMC 29148T were 63.0 and 63.1 mol%, respectively. Their distinct phylogenetic position and some physiological characteristics support the proposal of Lichenihabitans gen. nov., with the type species Lichenihabitans psoromatis sp. nov. (type strain, PAMC 29148T=KCCM 43293T=JCM 33311T). Lichenihabitantaceae fam. nov. is also proposed.
|
| 巻・号 |
69(12)
|
| ページ |
3837-3842
|
| 公開日 |
2019-12-1
|
| DOI |
10.1099/ijsem.0.003695
|
| PMID |
31556866
|
| MeSH |
Alphaproteobacteria / classification*
Alphaproteobacteria / isolation & purification
Antarctic Regions
Bacterial Typing Techniques
Base Composition
DNA, Bacterial / genetics
Fatty Acids / chemistry
Lichens / microbiology*
Phylogeny*
Pigmentation
RNA, Ribosomal, 16S / genetics
Sequence Analysis, DNA
Ubiquinone / analogs & derivatives
Ubiquinone / chemistry
|
| IF |
2.166
|
| 引用数 |
2
|
| リソース情報 |
| 一般微生物 |
JCM33311 |
