RRC ID 60554
Author Debnath SC, Miyah AMA, Chen C, Sheng H, Xu XW, Wu YH, Zheng DQ, Xu JZ, Di YN, Wang PM, Shen L.
Title Flavobacterium zhairuonensis sp. nov., a gliding bacterium isolated from marine sediment of the East China Sea.
Journal J. Microbiol.
Abstract A yellow pigmented, Gram-stain-negative, aerobic bacterium designated A5.7T was studied to evaluate the taxonomic position following the modern polyphasic approach. The strain was isolated from sediments near Zhairuo Island, which is situated in the East China Sea. Cells were non-spore forming rods without flagella but showed motility by gliding. Growth was observed at 15-35°C (optimum 28°C), pH 6.0-9.0 (optimum pH 6.5) and 0-2% (w/v) NaCl (optimum 0-0.5%) in LB broth. The major respiratory quinone of A5.7T was menaquinone 6. The major polar lipid of A5.7T was phosphatidylethanolamine and the predominant fatty acids (> 5%) were iso-C15:0, iso-C17:0 3-OH, C15:1ω6c, iso-C15:0 3-OH, iso-C15:1 G, summed feature 3 (C16:1ω7c and/or C16:1ω6c) and summed feature 9 (iso-C17:1ω9c and/or C16:010-methyl). Phylogenetic analysis based on 16S rRNA gene sequences showed that the isolate belongs to the genus Flavobacterium and shares the highest sequence similarities with Flavobacterium sharifuzzamanii A7.6T (98.5%), Flavobacterium tistrianum GB 56.1T (98.3%), Flavobacterium nitrogenifigens NXU-44T (97.8%), Flavobacterium anhuiense D3T (97.6%), Flavobacterium ginsenosidimutans THG 01T (97.6%), and Flavobacterium foetidum CJ42T (97.6%). Digital DNA-DNA hybridization and average nucleotide identity values between the strain and its closest phylogenetic neighbors showed the ranges from 19.6 to 34.1% and 73.7 to 87.9%, respectively. Therefore, based on polyphasic characteristics, strain A5.7T represents a novel species of the genus Flavobacterium for which the name Flavobacterium zhairuonensis sp. nov. is proposed. The type strain is A5.7T (= KCTC 62406T = MCCC 1K03494T).
Volume 57(12)
Pages 1065-1072
Published 2019-12
DOI 10.1007/s12275-019-9194-4
PII 10.1007/s12275-019-9194-4
PMID 31562606
MeSH Bacterial Typing Techniques Base Composition China DNA, Bacterial / genetics Fatty Acids / analysis Flavobacterium / classification* Flavobacterium / genetics Flavobacterium / isolation & purification* Flavobacterium / physiology Genome, Bacterial / genetics Geologic Sediments / microbiology* Hydrogen-Ion Concentration Nucleic Acid Hybridization Phosphatidylethanolamines / analysis Phylogeny* Quinones / analysis RNA, Ribosomal, 16S / genetics Seawater / microbiology* Sequence Analysis, DNA Sodium Chloride Temperature Vitamin K 2 / analogs & derivatives Vitamin K 2 / analysis
IF 2.319
Times Cited 0
Resource
General Microbes JCM32085 JCM19455 JCM20475