RRC ID 66625
Author He SW, Wang X, Guo HB, Han JG, Thin KK, Gao JS, Ma LA, Zhang XX.
Title Gracilibacillus oryzae sp. nov., isolated from rice seeds.
Journal Int J Syst Evol Microbiol
Abstract A Gram-stain-positive, facultatively anaerobic, endospore-forming bacterium, designated strain TD8T, was isolated from surface-sterilized rice seeds (Oryza sativa L.). Phylogenetic analysis of the 16S rRNA gene indicated that strain TD8T should be placed within the genus Gracilibacillus (95.2-99.0 % sequence similarity); it exhibited highest similarities to Gracilibacillus ureilyticus CGMCC 1.7727T (99.0 %), 'Gracilibacillus xinjiangensis' CGMCC 1.12449T (98.9 %) and Gracilibacillus dipsosauri CGMCC 1.3642T (97.5 %). Chemotaxonomic analysis showed that menaquinone-7 (MK-7) was the major isoprenoid quinone. Diphosphatidylglycerol, phosphatidylglycerol and one unidentified phospholipid were the major cellular polar lipids, and the major fatty acids were anteiso-C15 : 0, anteiso-C17 : 0, iso-C15 : 0, C16 : 0 and iso-C16 : 0, which supported the allocation of the strain to the genus Gracilibacillus. The digital DNA-DNA hybridization value between strain TD8T and Gracilibacillus ureilyticus CGMCC 1.7727T was lower than 70 % (22.60 %), and the average nucleotide identity score was 79.54±5.09 %, suggesting that strain TD8T represented a novel species in the genus Gracilibacillus. The genomic DNA G+C content was 37.5 %. Based on physiological and biochemical characteristics and genotypic data, strain TD8T represents a novel species of the genus Gracilibacillus, for which the name Gracilibacillus oryzae sp. nov. is proposed. The type strain is TD8T (=ACCC 61556T=CICC 24889T=JCM 33537T).
Volume 70(10)
Pages 5467-5472
Published 2020-10-1
DOI 10.1099/ijsem.0.004427
PMID 32894210
MeSH Bacillaceae / classification* Bacillaceae / isolation & purification Bacterial Typing Techniques Base Composition China DNA, Bacterial / genetics Fatty Acids / chemistry Nucleic Acid Hybridization Oryza / microbiology* Phospholipids / chemistry Phylogeny* RNA, Ribosomal, 16S / genetics Seeds / microbiology* Sequence Analysis, DNA Vitamin K 2 / analogs & derivatives Vitamin K 2 / chemistry
Resource
General Microbes JCM33537