論文 - 詳細
| RRC ID | 84362 |
|---|---|
| 著者 | Lee J, Fujimoto T, Yamaguchi K, Shigenobu S, Sahara K, Shimada T. |
| タイトル | Comprehensive genome annotation of Trilocha varians, a new model species of Lepidopteran insects. |
| ジャーナル | Sci Data |
| Abstract |
Trilocha varians is a member of the bombycid moths. Since T. varians has a considerably shorter generation period than the prevailing model species, Bombyx mori, this species would be a novel model insect in Lepidoptera. To facilitate further use of T. varians, we developed genome annotation information on the chromosome-scale assembly of T. varians previously published by our group. 9 RNA-seq datasets and 2 Iso-seq datasets were submitted for transcriptome-based gene prediction. As a result, 16,266 protein-coding genes were predicted on the latest genome assembly, and 98.6% of BUSCO sequences were present in our gene models. ATAC-seq was also conducted to determine chromatin accessibility across the genome. Finally, piRNA-targeted small RNA-seq revealed T. varians genome harbours 517 piRNA clusters (piCs). This information will encourage and facilitate potential users who plan to use this species. |
| 巻・号 | 12(1) |
| ページ | 124 |
| 公開日 | 2025-1-21 |
| DOI | 10.1038/s41597-025-04411-3 |
| PII | 10.1038/s41597-025-04411-3 |
| PMID | 39837902 |
| PMC | PMC11751155 |
| MeSH | Animals Genome, Insect* Molecular Sequence Annotation* Moths* / genetics RNA, Small Interfering / genetics Transcriptome |
| IF | 5.541 |
| オルトメトリクス指標 |
オルトメトリクス指標項目
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| 最多言及媒体 | News |
| 各媒体での言及数の合計 | 8 |
| 過去6か月間でのオルトメトリクス指標の変動値 | 0.0 |
| リソース情報 | |
| カイコ | T. varians |