| RRC ID |
84362
|
| 著者 |
Lee J, Fujimoto T, Yamaguchi K, Shigenobu S, Sahara K, Shimada T.
|
| タイトル |
Comprehensive genome annotation of Trilocha varians, a new model species of Lepidopteran insects.
|
| ジャーナル |
Sci Data
|
| Abstract |
Trilocha varians is a member of the bombycid moths. Since T. varians has a considerably shorter generation period than the prevailing model species, Bombyx mori, this species would be a novel model insect in Lepidoptera. To facilitate further use of T. varians, we developed genome annotation information on the chromosome-scale assembly of T. varians previously published by our group. 9 RNA-seq datasets and 2 Iso-seq datasets were submitted for transcriptome-based gene prediction. As a result, 16,266 protein-coding genes were predicted on the latest genome assembly, and 98.6% of BUSCO sequences were present in our gene models. ATAC-seq was also conducted to determine chromatin accessibility across the genome. Finally, piRNA-targeted small RNA-seq revealed T. varians genome harbours 517 piRNA clusters (piCs). This information will encourage and facilitate potential users who plan to use this species.
|
| 巻・号 |
12(1)
|
| ページ |
124
|
| 公開日 |
2025-1-21
|
| DOI |
10.1038/s41597-025-04411-3
|
| PII |
10.1038/s41597-025-04411-3
|
| PMID |
39837902
|
| PMC |
PMC11751155
|
| MeSH |
Animals
Genome, Insect*
Molecular Sequence Annotation*
Moths* / genetics
RNA, Small Interfering / genetics
Transcriptome
|
| IF |
5.541
|
| リソース情報 |
| カイコ |
T. varians |
