RRC ID 86974
Author Kim SE, Noda R, Liu YC, Nakajima Y, Kameoka S, Motooka D, Mizuno S, Takahashi S, Takaya K, Murase T, Ikematsu K, Tratsiakova K, Motoyama T, Nakashima M, Kishi K, Martin P, Seno S, Okuzaki D, Mori R.
Title Novel integrated multiomics analysis reveals a key role for integrin beta-like 1 in wound scarring.
Journal EMBO Rep
Abstract Exacerbation of scarring can originate from a minority fibroblast population that has undergone inflammatory-mediated genetic changes within the wound microenvironment. The fundamental relationship between molecular and spatial organization of the repair process at the single-cell level remains unclear. We have developed a novel, high-resolution spatial multiomics method that integrates spatial transcriptomics with scRNA-Seq; we identified new characteristic features of cell-cell communication and signaling during the repair process. Data from PU.1-/- mice, which lack an inflammatory response, combined with scRNA-Seq and Visium transcriptomics, led to the identification of nine genes potentially involved in inflammation-related scarring, including integrin beta-like 1 (Itgbl1). Transgenic mouse experiments confirmed that Itgbl1-expressing fibroblasts are required for granulation tissue formation and drive fibrogenesis during skin repair. Additionally, we detected a minority population of Acta2high-expressing myofibroblasts with apparent involvement in scarring, in conjunction with Itgbl1 expression. IL1β signaling inhibited Itgbl1 expression in TGFβ1-treated primary fibroblasts from humans and mice. Our novel methodology reveal molecular mechanisms underlying fibroblast-inflammatory cell interactions that initiate wound scarring.
Volume 26(1)
Pages 122-152
Published 2025-1-1
DOI 10.1038/s44319-024-00322-3
PII 10.1038/s44319-024-00322-3
PMID 39558136
PMC PMC11724056
MeSH Actins / genetics Actins / metabolism Animals Cell Communication Cicatrix* / genetics Cicatrix* / metabolism Cicatrix* / pathology Fibroblasts / metabolism Gene Expression Profiling Humans Inflammation / genetics Integrin beta1* / genetics Integrin beta1* / metabolism Interleukin-1beta / metabolism Mice Mice, Knockout Mice, Transgenic Multiomics Myofibroblasts / metabolism Signal Transduction Skin / metabolism Skin / pathology Transcriptome Transforming Growth Factor beta1 Wound Healing* / genetics
IF 7.497
Resource
Mice RBRC04874