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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Human and Animal Cells   201B7(HPS0063)   52678   Tashiro S, Le MNT, Kusama Y, Nakatani E, Suga M, Furue MK, Satoh T, Sugiura S, Kanamori T, Ohnuma K.   High cell density suppresses BMP4-induced differentiation of human pluripotent stem cells to produce macroscopic spatial patterning in a unidirectional perfusion culture chamber.   J. Biosci. Bioeng.   2018 -4 -24       29681444   10.1016/j.jbiosc.2018.03.007  
Human and Animal Cells   Hep G2(RCB1886)   52628   Yajima Y, Lee CN, Yamada M, Utoh R, Seki M.   Development of a perfusable 3D liver cell cultivation system via bundling-up assembly of cell-laden microfibers.   J. Biosci. Bioeng.   2018 -3 -6   126(1)   111-118   29502942   10.1016/j.jbiosc.2018.01.022  
Algae   NIES-2151   53110   Htet AN, Noguchi M, Ninomiya K, Tsuge Y, Kuroda K, Kajita S, Masai E, Katayama Y, Shikinaka K, Otsuka Y, Nakamura M, Honda R, Takahashi K.   Application of microalgae hydrolysate as a fermentation medium for microbial production of 2-pyrone 4,6-dicarboxylic acid.   J. Biosci. Bioeng.   2018 -2 -6   125(6)   717-722   29395960   10.1016/j.jbiosc.2017.12.026  
Human and Animal Cells   253G1(HPS0002)   52591   Kato Y, Kim MH, Kino-Oka M.   Comparison of growth kinetics between static and dynamic cultures of human induced pluripotent stem cells.   J. Biosci. Bioeng.   2018 -2 -6   125(6)   736-740   29398548   10.1016/j.jbiosc.2018.01.002  
Human and Animal Cells   SP2/0-Ag14(RCB0209)   52478   Akagi S, Nakajima C, Tanaka Y, Kurihara Y.   Flow cytometry-based method for rapid and high-throughput screening of hybridoma cells secreting monoclonal antibody.   J. Biosci. Bioeng.   2017 -11 -28   125(4)   464-469   29174537   10.1016/j.jbiosc.2017.10.012  
General Microbes   JCM 12987, JCM 13470, JCM 1296, JCM 1392,...   50946   Tawthep S, Fukiya S, Lee JY, Hagio M, Ogura Y, Hayashi T, Yokota A.   Isolation of six novel 7-oxo- or urso-type secondary bile acid-producing bacteria from rat cecal contents.   J. Biosci. Bioeng.   2017 -7 -29   124(5)   514-522   28751127   10.1016/j.jbiosc.2017.06.002  
Yeast   BY4330   49252   Numamoto M, Maekawa H, Kaneko Y.   Efficient genome editing by CRISPR/Cas9 with a tRNA-sgRNA fusion in the methylotrophic yeast Ogataea polymorpha.   J. Biosci. Bioeng.   2017 -7 -2   124(5)   487-492   28666889   10.1016/j.jbiosc.2017.06.001  
Yeast   pGK422   50380   Morita K, Nomura Y, Ishii J, Matsuda F, Kondo A, Shimizu H.   Heterologous expression of bacterial phosphoenol pyruvate carboxylase and Entner-Doudoroff pathway in Saccharomyces cerevisiae for improvement of isobutanol production.   J. Biosci. Bioeng.   2017 -5 -26   124(3)   263-270   28539187   10.1016/j.jbiosc.2017.04.005  
DNA material, General Microbes   Genomic DNA of Bacillus subtilis subsp. subtilis JCM 1465...   48084   Hoshino T, Hamada Y.   Estimation of the influence of sequencing errors and distribution of random-sequence tags on quantitative sequencing.   J. Biosci. Bioeng.   2017 -5 -2   124(3)   359-364   28457659   10.1016/j.jbiosc.2017.04.003  
Human and Animal Cells   201B7(HPS0063)   52194   Kondo Y, Hattori K, Tashiro S, Nakatani E, Yoshimitsu R, Satoh T, Sugiura S, Kanamori T, Ohnuma K.   Compartmentalized microfluidic perfusion system to culture human induced pluripotent stem cell aggregates.   J. Biosci. Bioeng.   2017 -4 -25   124(2)   234-241   28434976   10.1016/j.jbiosc.2017.03.014  
Human and Animal Cells   Ba/F3(RCB0805)   52142   Nguyen TD, Takasuka H, Kaku Y, Inoue S, Nagamune T, Kawahara M.   Engineering a growth sensor to select intracellular antibodies in the cytosol of mammalian cells.   J. Biosci. Bioeng.   2017 -3 -21   124(1)   125-132   28319021   10.1016/j.jbiosc.2017.02.017  
Human and Animal Cells   C2C12(RCB0987)   52129   Ono A, Ito A, Sato T, Yamaguchi M, Suzuki T, Kawabe Y, Kamihira M.   Hypoxia-responsive transgene expression system using RTP801 promoter and synthetic transactivator fused with oxygen-dependent degradation domain.   J. Biosci. Bioeng.   2017 -3 -13   124(1)   115-124   28284789   10.1016/j.jbiosc.2017.02.012  
Human and Animal Cells   201B7(HPS0063)   52097   Nagasaka R, Gotou Y, Yoshida K, Kanie K, Shimizu K, Honda H, Kato R.   Image-based cell quality evaluation to detect irregularities under same culture process of human induced pluripotent stem cells.   J. Biosci. Bioeng.   2017 -2 -13   123(5)   642-650   28189491   10.1016/j.jbiosc.2016.12.015  
DNA material   pQE-Lrp (RDB15924); MG1655 delta lrp (RDB15921)...   52869   Ihara K, Sato K, Hori H, Makino Y, Shigenobu S, Ando T, Isogai E, Yoneyama H.   Expression of the alaE gene is positively regulated by the global regulator Lrp in response to intracellular accumulation of l-alanine in Escherichia coli.   J. Biosci. Bioeng.   2017 -1 -7   123(4)   444-450   28057466   10.1016/j.jbiosc.2016.11.015  
General Microbes   JCM 1157   50674   Elsayed KM, Islam MR, Abdullah-Al-Mahin, Nagao JI, Zendo T, Sonomoto K.   LiaRS reporter assay: A simple tool to identify lipid II binding moieties in lantibiotic nukacin ISK-1.   J. Biosci. Bioeng.   2016 -11 -20   123(3)   398-401   27856233   10.1016/j.jbiosc.2016.10.002  
General Microbes   JCM11003   50675   Kudoh K, Kubota G, Fujii R, Kawano Y, Ihara M.   Exploration of the 1-deoxy-d-xylulose 5-phosphate synthases suitable for the creation of a robust isoprenoid biosynthesis system.   J. Biosci. Bioeng.   2016 -11 -20   123(3)   300-307   27856234   10.1016/j.jbiosc.2016.10.005  
Human and Animal Cells   293T(RCB2202)   51892   Chung J, Aburaya S, Aoki W, Ueda M.   Molecular changes in appearance of a cancer cell among normal HEK293T cells.   J. Biosci. Bioeng.   2016 -10 -26   123(3)   281-286   27777049   10.1016/j.jbiosc.2016.09.012  
General Microbes   JCM 19919   48442   Ng LM, Sudesh K.   Identification of a new polyhydroxyalkanoate (PHA) producer Aquitalea sp. USM4 (JCM 19919) and characterization of its PHA synthase.   J. Biosci. Bioeng.   2016 -10 -26   122(5)   550-557   27132174   10.1016/j.jbiosc.2016.03.024  
Human and Animal Cells   Hepa 1-6(RCB1638)   52016   Nishihara M, Kanda GN, Suzuki T, Yamakado S, Harashima H, Kamiya H.   Enhanced transgene expression by plasmid-specific recruitment of histone acetyltransferase.   J. Biosci. Bioeng.   2016 -10 -18   123(3)   277-280   27746157   10.1016/j.jbiosc.2016.09.008  
Human and Animal Cells   RAW 264(RCB0535)   51670   Nakabayashi H, Aoyama S, Kawahara M, Nagamune T.   Differentiation signalobody: Demonstration of antigen-dependent osteoclast differentiation from a progenitor cell line.   J. Biosci. Bioeng.   2016 -9   122(3)   357-63   26979343   10.1016/j.jbiosc.2016.02.010  
Human and Animal Cells   H-1(AES0001)   51669   Tani H, Takeshita J, Aoki H, Abe R, Toyoda A, Endo Y, Miyamoto S, Gamo M, Torimura M.   Genome-wide gene expression analysis of mouse embryonic stem cells exposed to p-dichlorobenzene.   J. Biosci. Bioeng.   2016 -9   122(3)   329-33   26975756   10.1016/j.jbiosc.2016.02.007  
DNA material   Thermus thermophilus expression plasmid TEx01E06 (THR000502...   39655   Tajima K, Han X, Hashimoto Y, Satoh Y, Satoh T, Taguchi S.   In vitro synthesis of polyhydroxyalkanoates using thermostable acetyl-CoA synthetase, CoA transferase, and PHA synthase from thermotorelant bacteria.   J. Biosci. Bioeng.   2016 -6 -28   122(6)   660-665   27342638   10.1016/j.jbiosc.2016.06.001  
DNA material   pcDNA4/chicken_ST3Gal1-His (RDB14636); pcDNA4/chi...   50605   Kidani S, Kaneoka H, Okuzaki Y, Asai S, Kojima Y, Nishijima K, Iijima S.   Analyses of chicken sialyltransferases related to O-glycosylation.   J. Biosci. Bioeng.   2016 -5 -7   122(4)   379-84   27150510   10.1016/j.jbiosc.2016.03.017  
Yeast   pGK424, pGK425, pGK426   48079   Shen L, Nishimura Y, Matsuda F, Ishii J, Kondo A.   Overexpressing enzymes of the Ehrlich pathway and deleting genes of the competing pathway in Saccharomyces cerevisiae for increasing 2-phenylethanol production from glucose.   J. Biosci. Bioeng.   2016 -3 -16   122(1)   34-9   26975754   10.1016/j.jbiosc.2015.12.022  
General Microbes   JCM 20778   48441   Xiao Z, Awata T, Zhang D, Katayama A.   Denitrification by Pseudomonas stutzeri coupled with CO2 reduction by Sporomusa ovata with hydrogen as an electron donor assisted by solid-phase humin.   J. Biosci. Bioeng.   2016 -3 -16   122(3)   307-13   26975755   10.1016/j.jbiosc.2016.02.002  
DNA material   pDB05-Cagpd1 (RDB14266); T-easy-Cagpd2 (RDB14391...   45804   Mizushima D, Iwata H, Ishimaki Y, Ogihara J, Kato J, Kasumi T.   Two glycerol 3-phosphate dehydrogenase isogenes from Candida versatilis SN-18 play an important role in glycerol biosynthesis under osmotic stress.   J. Biosci. Bioeng.   2016 -2 -26   121(5)   523-9   26906228   10.1016/j.jbiosc.2015.10.002  
Yeast   BYP148   36114   Mizushima D, Iwata H, Ishimaki Y, Ogihara J, Kato J, Kasumi T.   Two glycerol 3-phosphate dehydrogenase isogenes from Candida versatilis SN-18 play an important role in glycerol biosynthesis under osmotic stress.   J. Biosci. Bioeng.   2016 -2 -26   121(5)   523-9   26906228   10.1016/j.jbiosc.2015.10.002  
General Microbes   JCM 20778   48443   Xiao Z, Awata T, Zhang D, Zhang C, Li Z, Katayama A.   Enhanced denitrification of Pseudomonas stutzeri by a bioelectrochemical system assisted with solid-phase humin.   J. Biosci. Bioeng.   2016 -2 -26   122(1)   85-91   26905325   10.1016/j.jbiosc.2015.11.004  
Human and Animal Cells   iPS-MEF-Ng-20D-17)(APS0001)   51711   Miyamoto D, Nakazawa K.   Differentiation of mouse iPS cells is dependent on embryoid body size in microwell chip culture.   J. Biosci. Bioeng.   2016 -1   122(4)   507-12   27090344   10.1016/j.jbiosc.2016.03.018  
Human and Animal Cells   Hep G2(RCB1886)   37595   Takei T, Kitazono Z, Ozuno Y, Yoshinaga T, Nishimata H, Yoshida M.   Vascular-like network prepared using hollow hydrogel microfibers.   J. Biosci. Bioeng.   2015 -7 -23   121(3)   336-40   26199226   10.1016/j.jbiosc.2015.06.018  
General Microbes   JCM 12802   48440   Wang C, Wang H, Ma R, Shi P, Niu C, Luo H, Yang P, Yao B.   Biochemical characterization of a novel thermophilic α-galactosidase from Talaromyces leycettanus JCM12802 with significant transglycosylation activity.   J. Biosci. Bioeng.   2015 -6 -20   121(1)   7-12   26087712   10.1016/j.jbiosc.2015.04.023  
Mice   C57BL-p53+/-(RBRC01361)   34775   Okahashi N, Kohno S, Kitajima S, Matsuda F, Takahashi C, Shimizu H.   Metabolic characterization of cultured mammalian cells by mass balance analysis, tracer labeling experiments and computer-aided simulations.   J. Biosci. Bioeng.   2015 -5 -6   120(6)   725-31   25936961   10.1016/j.jbiosc.2015.04.003  
Human and Animal Cells     37050   Minamihata K, Maeda Y, Yamaguchi S, Ishihara W, Ishiwatari A, Takamori S, Yamahira S, Nagamune T.   Photosensitizer and polycationic peptide-labeled streptavidin as a nano-carrier for light-controlled protein transduction.   J. Biosci. Bioeng.   2015 -5 -4   120(6)   630-6   25935501   10.1016/j.jbiosc.2015.04.001  
Human and Animal Cells   Hep G2(RCB1886)   37036   Takei T, Aokawa R, Shigemitsu T, Kawakami K, Yoshida M.   Fabrication of uniformly cell-laden porous scaffolds using a gas-in-liquid templating technique.   J. Biosci. Bioeng.   2015 -4 -29   120(5)   577-81   25912452   10.1016/j.jbiosc.2015.03.017  
Silkworms   f38   36121   Hayashi K, Lee JM, Tomozoe Y, Kusakabe T, Kamiya N.   Heme precursor injection is effective for Arthromyces ramosus peroxidase fusion protein production by a silkworm expression system.   J. Biosci. Bioeng.   2015 -4 -25   120(4)   384-6   25907573   10.1016/j.jbiosc.2015.02.013  
Human and Animal Cells   293(RCB1637)   36923   Ono A, Ito A, Suzuki T, Yamaguchi M, Kawabe Y, Kamihira M.   DNA damage-responsive transgene expression mediated by the p53 promoter with transcriptional amplification.   J. Biosci. Bioeng.   2015 -3 -17   120(4)   463-6   25772439   10.1016/j.jbiosc.2015.02.009  
Algae   NIES-2235   39741   Kong F, Yamasaki T, Kurniasih SD, Hou L, Li X, Ivanova N, Okada S, Ohama T.   Robust expression of heterologous genes by selection marker fusion system in improved Chlamydomonas strains.   J. Biosci. Bioeng.   2015 -2 -11   120(3)   239-45   25660568   10.1016/j.jbiosc.2015.01.005  
Yeast   NA   35127   Numamoto M, Tagami S, Ueda Y, Imabeppu Y, Sasano Y, Sugiyama M, Maekawa H, Harashima S.   Nuclear localization domains of GATA activator Gln3 are required for transcription of target genes through dephosphorylation in Saccharomyces cerevisiae.   J. Biosci. Bioeng.   2015 -2 -3   120(2)   121-7   25641578   10.1016/j.jbiosc.2014.12.017  
General Microbes   JCM 10246, JCM 11223, JCM 15650   40806   Morohoshi T, Tominaga Y, Someya N, Ikeda T.   Characterization of a novel thermostable N-acylhomoserine lactonase from the thermophilic bacterium Thermaerobacter marianensis.   J. Biosci. Bioeng.   2014 -12 -23   120(1)   1-5   25529553   10.1016/j.jbiosc.2014.11.014  
Chicken / Quail     33247   Kojima Y, Mizutani A, Okuzaki Y, Nishijima K, Kaneoka H, Sasamoto T, Miyake K, Iijima S.   Analyses of chicken sialyltransferases related to N-glycosylation.   J. Biosci. Bioeng.   2014 -12 -17   119(6)   623-8   25499752   10.1016/j.jbiosc.2014.11.009  
General Microbes   JCM 6891   40794   Mitsui R, Katayama H, Tanaka M.   Requirement of carbon dioxide for initial growth of facultative methylotroph, Acidomonas methanolica MB58.   J. Biosci. Bioeng.   2014 -12 -17   120(1)   31-5   25511787   10.1016/j.jbiosc.2014.11.016  
Human and Animal Cells     45398   Horie M, Ito A, Maki T, Kawabe Y, Kamihira M.   Magnetically labeled feeder system for mouse pluripotent stem cell culture.   J. Biosci. Bioeng.   2014 -12 -4   119(5)   614-6   25468421   10.1016/j.jbiosc.2014.10.020  
Algae   NIES-144   37157   Giannelli L, Yamada H, Katsuda T, Yamaji H.   Effects of temperature on the astaxanthin productivity and light harvesting characteristics of the green alga Haematococcus pluvialis.   J. Biosci. Bioeng.   2014 -12 -3   119(3)   345-50   25441445   10.1016/j.jbiosc.2014.09.002  
Yeast   NA   35103   Sasano Y, Yamagishi K, Tanikawa M, Nakazawa T, Sugiyama M, Kaneko Y, Harashima S.   Stabilization of mini-chromosome segregation during mitotic growth by overexpression of YCR041W and its application to chromosome engineering in Saccharomyces cerevisiae.   J. Biosci. Bioeng.   2014 -12 -3   119(5)   526-31   25454064   10.1016/j.jbiosc.2014.10.006  
Yeast   NA   35106   Sharmin D, Sasano Y, Sugiyama M, Harashima S.   Type 2C protein phosphatase Ptc6 participates in activation of the Slt2-mediated cell wall integrity pathway in Saccharomyces cerevisiae.   J. Biosci. Bioeng.   2014 -12 -3   119(4)   392-8   25449759   10.1016/j.jbiosc.2014.09.013  
Yeast   BY4741?   36188   Srichaisupakit A, Ohashi T, Misaki R, Fujiyama K.   Production of initial-stage eukaryotic N-glycan and its protein glycosylation in Escherichia coli.   J. Biosci. Bioeng.   2014 -12 -3   119(4)   399-405   25449758   10.1016/j.jbiosc.2014.09.016  
General Microbes   JCM 2413   40718   Toki T, Nakamura K, Kurauchi M, Kanno T, Katsuda Y, Ikai H, Hayashi E, Egusa H, Sasaki K, Niwano Y.   Synergistic interaction between wavelength of light and concentration of H₂O₂ in bactericidal activity of photolysis of H₂O₂.   J. Biosci. Bioeng.   2014 -10 -6   119(3)   358-62   25282638   10.1016/j.jbiosc.2014.08.015  
Silkworms     33120   Nomura T, Suganuma M, Higa Y, Kataoka Y, Funaguma S, Okazaki H, Suzuki T, Kobayashi I, Sezutsu H, Fujiyama K.   Improvement of glycosylation structure by suppression of β-N-acetylglucosaminidases in silkworm.   J. Biosci. Bioeng.   2014 -9 -7   119(2)   131-6   25193875   10.1016/j.jbiosc.2014.07.012  
General Microbes   JCM 1190   34335   Sakanaka M, Tamai S, Hirayama Y, Onodera A, Koguchi H, Kano Y, Yokota A, Fukiya S.   Functional analysis of bifidobacterial promoters in Bifidobacterium longum and Escherichia coli using the α-galactosidase gene as a reporter.   J. Biosci. Bioeng.   2014 -6 -17   118(5)   489-95   24932968   10.1016/j.jbiosc.2014.05.002  
Human and Animal Cells     45090   Horiguchi A, Yazaki K, Aoyagi M, Ohnuki Y, Kurosawa H.   Effective Rho-associated protein kinase inhibitor treatment to dissociate human iPS cells for suspension culture to form embryoid body-like cell aggregates.   J. Biosci. Bioeng.   2014 -5 -27   118(5)   588-92   24856590   10.1016/j.jbiosc.2014.04.008  
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