| RRC ID |
34132
|
| Author |
Chiu HH, Rogozin DY, Huang SP, Degermendzhy AG, Shieh WY, Tang SL.
|
| Title |
Aliidiomarina shirensis sp. nov., a halophilic bacterium isolated from Shira Lake in Khakasia, southern Siberia, and a proposal to transfer Idiomarina maris to the genus Aliidiomarina.
|
| Journal |
Int J Syst Evol Microbiol
|
| Abstract |
Strain AIS(T), an aerobic halophilic, Gram-reaction-negative, heterotrophic bacterium isolated from the water of Shira Lake in Khakasia, southern Siberia, was characterized using a polyphasic approach. Our analysis of the 16S rRNA gene sequences showed that 'Aliidiomarina haloalkalitolerans', 'Aliidiomarina sanyensis', Idiomarina maris and AIS(T) formed a distinct lineage. The sequence similarities between AIS(T) and the type strains of species of the genera Idiomarina and Aliidiomarina were 91.6-95.1 % and 94.0-96.9 %, respectively. The major isoprenoid quinone of AIS(T) was ubiquinone 8 (Q-8). Predominant cellular fatty acids were iso-C17 : 0, iso-C15 : 0 and summed feature 9. The genomic DNA G+C content was 45.8 mol%. It is concluded that AIS(T) represents a novel species of the genus Aliidiomarina, and the name Aliidiomarina shirensis sp. nov. is herein proposed for it. The type strain is AIS(T) ( = JCM 17761(T) = BCRC 80327(T)). Based on its fatty acid profile and our phylogenetic analysis, we propose that Idiomarina maris be transferred to the genus Aliidiomarina.
|
| Volume |
64(Pt 4)
|
| Pages |
1334-1339
|
| Published |
2014-4-1
|
| DOI |
10.1099/ijs.0.057851-0
|
| PMID |
24436066
|
| MeSH |
Alteromonadaceae / classification*
Bacterial Typing Techniques
Base Composition
DNA, Bacterial / genetics
Fatty Acids / chemistry
Gammaproteobacteria / classification*
Gammaproteobacteria / genetics
Gammaproteobacteria / isolation & purification
Lakes / microbiology*
Molecular Sequence Data
Phospholipids / chemistry
Phylogeny*
RNA, Ribosomal, 16S / genetics
Sequence Analysis, DNA
Siberia
Ubiquinone / chemistry
|
| IF |
2.415
|
| Times Cited |
12
|
|
WOS Category
|
MICROBIOLOGY
|
| Resource |
| General Microbes |
JCM 17761 |
