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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Wheat   wheat FLcDNA   47977   Danilova TV, Zhang G, Liu W, Friebe B, Gill BS.   Homoeologous recombination-based transfer and molecular cytogenetic mapping of a wheat streak mosaic virus and Triticum mosaic virus resistance gene Wsm3 from Thinopyrum intermedium to wheat.   Theor Appl Genet.   2016 -12 -3   130(3)   549-556   27900400   10.1007/s00122-016-2834-8  
Wheat   wheat FLcDNA   47978   Liu W, Koo DH, Friebe B, Gill BS.   A set of Triticum aestivum-Aegilops speltoides Robertsonian translocation lines.   Theor Appl Genet.   2016 -8 -26   129(12)   2359-2368   27558595   10.1007/s00122-016-2774-3  
Wheat     36365   Naranjo T.   Forcing the shift of the crossover site to proximal regions in wheat chromosomes.   Theor Appl Genet.   2015 -9   128(9)   1855-63   26066968   10.1007/s00122-015-2552-7  
Wheat     36381   Suzuki T, Murai MN, Hayashi T, Nasuda S, Yoshimura Y, Komatsuda T.   Resistance to wheat yellow mosaic virus in Madsen wheat is controlled by two major complementary QTLs.   Theor Appl Genet.   2015 -8   128(8)   1569-78   25957645   10.1007/s00122-015-2532-y  
Rice   野生イネ:Core Rank1&Rank2   35702   Fujino K, Obara M, Ikegaya T, Tamura K.   Genetic shift in local rice populations during rice breeding programs in the northern limit of rice cultivation in the world.   Theor Appl Genet.   2015 -5 -30   128(9)   1739-46   26021294   10.1007/s00122-015-2543-8  
Wheat     47972   Suzuki T, Murai MN, Hayashi T, Nasuda S, Yoshimura Y, Komatsuda T.   Resistance to wheat yellow mosaic virus in Madsen wheat is controlled by two major complementary QTLs.   Theor Appl Genet.   2015 -5 -11   128(8)   1569-78   25957645   10.1007/s00122-015-2532-y  
Wheat   FLcDNA, KOMUGI database tplb0028l15 AK333586 ...   33205   Danilova TV, Friebe B, Gill BS.   Development of a wheat single gene FISH map for analyzing homoeologous relationship and chromosomal rearrangements within the Triticeae.   Theor Appl Genet.   2014 -3   127(3)   715-30   24408375   10.1007/s00122-013-2253-z  
Wheat   KU-2811, KU-2100, KU-2093, KU-2826, ...   33231   Iehisa JC, Shimizu A, Sato K, Nishijima R, Sakaguchi K, Matsuda R, Nasuda S, Takumi S.   Genome-wide marker development for the wheat D genome based on single nucleotide polymorphisms identified from transcripts in the wild wheat progenitor Aegilops tauschii.   Theor Appl Genet.   2014 -2   127(2)   261-71   24158251   10.1007/s00122-013-2215-5  
Wheat   LPGKU2269, LPGKU2088, LPGKU2153   25692   Joshi GP, Endo TR, Nasuda S.   PCR and sequence analysis of barley chromosome 2H subjected to the gametocidal action of chromosome 2C.   Theor Appl Genet.   2013 -9   126(9)   2381-90   23765160   10.1007/s00122-013-2142-5  
Barley     30204   Ning S, Wang N, Sakuma S, Pourkheirandish M, Wu J, Matsumoto T, Koba T, Komatsuda T.   Structure, transcription and post-transcriptional regulation of the bread wheat orthologs of the barley cleistogamy gene Cly1.   Theor Appl Genet.   2013 -5   126(5)   1273-83   23381807   10.1007/s00122-013-2052-6  
Wheat   KU-515 KU-163 KU-165 KU-265 LPGKU2269   22722   Ning S, Wang N, Sakuma S, Pourkheirandish M, Wu J, Matsumoto T, Koba T, Komatsuda T.   Structure, transcription and post-transcriptional regulation of the bread wheat orthologs of the barley cleistogamy gene Cly1.   Theor Appl Genet.   2013 -5   126(5)   1273-83   23381807   10.1007/s00122-013-2052-6  
Barley     30205   Li C, Wang A, Ma X, Pourkheirandish M, Sakuma S, Wang N, Ning S, Nevo E, Nawrath C, Komatsuda T, Chen G.   An eceriferum locus, cer-zv, is associated with a defect in cutin responsible for water retention in barley (Hordeum vulgare) leaves.   Theor Appl Genet.   2013 -3   126(3)   637-46   23124432   10.1007/s00122-012-2007-3  
Wheat     19697   Sanz MJ, Loarce Y, Fominaya A, Vossen JH, Ferrer E.   Identification of RFLP and NBS/PK profiling markers for disease resistance loci in genetic maps of oats.   Theor Appl Genet.   2013 -1   126(1)   203-18   22948438   10.1007/s00122-012-1974-8  
Wheat   KU-10042 KU-10077 KU-1023 KU-10466 KU-10490...   22724   Takenaka S, Kawahara T.   Evolution and dispersal of emmer wheat (Triticum sp.) from novel haplotypes of Ppd-1 (photoperiod response) genes and their surrounding DNA sequences.   Theor Appl Genet.   2012 -9   125(5)   999-1014   22639190   10.1007/s00122-012-1890-y  
Rice   CSSL   17598   Wang Z, Yu C, Liu X, Liu S, Yin C, Liu L, Lei J, Jiang L, Yang C, Chen L, Zhai H, Wan J.   Identification of Indica rice chromosome segments for the improvement of Japonica inbreds and hybrids.   Theor Appl Genet.   2012 -5   124(7)   1351-64   22311371   10.1007/s00122-012-1792-z  
Rice   IL   12680   Win KT, Yamagata Y, Miyazaki Y, Doi K, Yasui H, Yoshimura A.   Independent evolution of a new allele of F1 pollen sterility gene S27 encoding mitochondrial ribosomal protein L27 in Oryza nivara.   Theor Appl Genet.   2011 -2   122(2)   385-94   20878142   10.1007/s00122-010-1454-y  
Information   KOMUGI   18958   Herrera-Foessel SA, Lagudah ES, Huerta-Espino J, Hayden MJ, Bariana HS, Singh D, Singh RP.   New slow-rusting leaf rust and stripe rust resistance genes Lr67 and Yr46 in wheat are pleiotropic or closely linked.   Theor Appl Genet.   2011 -1   122(1)   239-49   20848270   10.1007/s00122-010-1439-x  
Information   KOMUGI   18956   Li Q, Chen XM, Wang MN, Jing JX.   Yr45, a new wheat gene for stripe rust resistance on the long arm of chromosome 3D.   Theor Appl Genet.   2011 -1   122(1)   189-97   20838759   10.1007/s00122-010-1435-1  
Barley   Steptoe/Morex DH lines?   12013   Li WT, Wei YM, Wang JR, Liu CJ, Lan XJ, Jiang QT, Pu ZE, Zheng YL.   Identification, localization, and characterization of putative USP genes in barley.   Theor Appl Genet.   2010 -9   121(5)   907-17   20523963   10.1007/s00122-010-1359-9  
Rice   CSSL   11419   Ye G, Liang S, Wan J.   QTL mapping of protein content in rice using single chromosome segment substitution lines.   Theor Appl Genet.   2010 -8   121(4)   741-50   20473653   10.1007/s00122-010-1345-2  
Information   Oryzabase   12283   Julie Orjuela et al.   A universal core genetic map for rice   Theor Appl Genet.   2010   120   563-572      
Barley   Haruna nijo, H602?   4631   Sato K, Takeda K.   An application of high-throughput SNP genotyping for barley genome mapping and characterization of recombinant chromosome substitution lines.   Theor Appl Genet.   2009 -8   119(4)   613-9   19488734   10.1007/s00122-009-1071-9  
Barley   Hordeum vulgare? H.bulbosum?   4438   Johnston PA, Timmerman-Vaughan GM, Farnden KJ, Pickering R.   Marker development and characterisation of Hordeum bulbosum introgression lines: a resource for barley improvement.   Theor Appl Genet.   2009 -5   118(8)   1429-37   19263032   10.1007/s00122-009-0992-7  
Wheat   LPGKU1001~LPGKU1341   3895   Ishikawa G, Nakamura T, Ashida T, Saito M, Nasuda S, Endo TR, Wu J, Matsumoto T.   Localization of anchor loci representing five hundred annotated rice genes to wheat chromosomes using PLUG markers.   Theor Appl Genet.   2009 -2   118(3)   499-514   19057889   10.1007/s00122-008-0916-y  
Information   KOMUGI database   4449   Zhang W, Chao S, Manthey F, Chicaiza O, Brevis JC, Echenique V, Dubcovsky J.   QTL analysis of pasta quality using a composite microsatellite and SNP map of durum wheat.   Theor Appl Genet.   2008 -11   117(8)   1361-77   18781292   10.1007/s00122-008-0869-1  
Rice   W0025, W1623, W0107, W1577, W1593, ...   3672   Chung MC, Lee YI, Cheng YY, Chou YJ, Lu CF.   Chromosomal polymorphism of ribosomal genes in the genus Oryza.   Theor Appl Genet.   2008 -4   116(6)   745-53   18214422   10.1007/s00122-007-0705-z  
Barley   EST clones, Haruna Nijo, H602   4619   Hori K, Sato K, Takeda K.   Detection of seed dormancy QTL in multiple mapping populations derived from crosses involving novel barley germplasm.   Theor Appl Genet.   2007 -10   115(6)   869-76   17712544   10.1007/s00122-007-0620-3  
Wheat   KT003-005?, KT001-001?   2513   Nakamura S, Komatsuda T, Miura H.   Mapping diploid wheat homologues of Arabidopsis seed ABA signaling genes and QTLs for seed dormancy.   Theor Appl Genet.   2007 -5   114(7)   1129-39   17387417   10.1007/s00122-007-0502-8  
Arabidopsis / Cultured plant cells, genes   rpc00031   6302   Noro Y, Takano-Shimizu T, Syono K, Kishima Y, Sano Y.   Genetic variations in rice in vitro cultures at the EPSPs-RPS20 region.   Theor Appl Genet.   2006 -12 -21   114(4)   705-11   17177062   10.1007/s00122-006-0470-4  
Rice   W1962,T65   3670   Fujita D, Doi K, Yoshimura A, Yasui H.   Molecular mapping of a novel gene, Grh5, conferring resistance to green rice leafhopper (Nephotettix cincticeps Uhler) in rice, Oryza sativa L.   Theor Appl Genet.   2006 -8   113(4)   567-73   16835766   10.1007/s00122-006-0270-x  
Barley   (N350)Tukucha, (N647)Dhumpu1, (N047)Dhumpu2...   2089   Pandey M, Wagner C, Friedt W, Ordon F.   Genetic relatedness and population differentiation of Himalayan hulless barley (Hordeum vulgare L.) landraces inferred with SSRs.   Theor Appl Genet.   2006 -8   113(4)   715-29   16845521   10.1007/s00122-006-0340-0  
Wheat   LPGKU2088~LPGKU2104   2507   Suchánková P, Kubaláková M, Kovárová P, Bartos J, Cíhalíková J, Molnár-Láng M, Endo TR, Dolezel J.   Dissection of the nuclear genome of barley by chromosome flow sorting.   Theor Appl Genet.   2006 -8   113(4)   651-9   16810504   10.1007/s00122-006-0329-8  
Barley   EST Clones   651   Hori K, Kobayashi T, Sato K, Takeda K.   QTL analysis of Fusarium head blight resistance using a high-density linkage map in barley.   Theor Appl Genet.   2005 -11   111(8)   1661-72   16208506   10.1007/s00122-005-0102-4  
Wheat   ?   2509   Gandhi HT, Vales MI, Watson CJ, Mallory-Smith CA, Mori N, Rehman M, Zemetra RS, Riera-Lizarazu O.   Chloroplast and nuclear microsatellite analysis of Aegilops cylindrica.   Theor Appl Genet.   2005 -8   111(3)   561-72   15986256   10.1007/s00122-005-2047-z  
Wheat   Aegilops tauschii Coss.   707   Matsuoka Y, Mori N, Kawahara T.   Genealogical use of chloroplast DNA variation for intraspecific studies of Aegilops tauschii Coss.   Theor Appl Genet.   2005 -7   111(2)   265-71   15895204   10.1007/s00122-005-2020-x  
Information   Rice   1747   Gu XY, Kianian SF, Hareland GA, Hoffer BL, Foley ME.   Genetic analysis of adaptive syndromes interrelated with seed dormancy in weedy rice (Oryza sativa).   Theor Appl Genet.   2005 -4   110(6)   1108-18   15782297   10.1007/s00122-005-1939-2  
Rice   W0120, W0157, W2078, W2099, W0652, ...   676   Nishikawa T, Vaughan DA, Kadowaki K.   Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes.   Theor Appl Genet.   2005 -2   110(4)   696-705   15650813   10.1007/s00122-004-1895-2  
Rice   CSSL   12502   Kubo T, Yoshimura A.   Epistasis underlying female sterility detected in hybrid breakdown in a Japonica-Indica cross of rice (Oryza sativa L.).   Theor Appl Genet.   2005 -1   110(2)   346-55   15549230   10.1007/s00122-004-1846-y  
Barley   OUH641, OUH662, OUH663, OUH765, OUH768, OUH785,...   650   Tanno K, Takeda K.   On the origin of six-rowed barley with brittle rachis, agriocrithon [Hordeum vulgare ssp. vulgare f. agriocrithon (Aberg) Bowd.], based on a DNA marker closely linked to the vrs1 (six-row gene) locus.   Theor Appl Genet.   2004 -12   110(1)   145-50   15526085   10.1007/s00122-004-1816-4  
Wheat   Saitama 27?, Norin 61?, Shinchunaga?   2504   Yan L, Helguera M, Kato K, Fukuyama S, Sherman J, Dubcovsky J.   Allelic variation at the VRN-1 promoter region in polyploid wheat.   Theor Appl Genet.   2004 -11   109(8)   1677-86   15480533   10.1007/s00122-004-1796-4  
Rice   W108, W120, W593, W1956, W1965, W19...   674   Yoshida K, Miyashita NT, Ishii T.   Nucleotide polymorphism in the Adh1 locus region of the wild rice Oryza rufipogon.   Theor Appl Genet.   2004 -11   109(7)   1406-16   15480535   10.1007/s00122-004-1752-3  
Barley   (J698) Azumamugi, (J518) Kanto Nakate Gold, (...   649   Komatsuda T, Maxim P, Senthil N, Mano Y.   High-density AFLP map of nonbrittle rachis 1 (btr1) and 2 (btr2) genes in barley (Hordeum vulgare L.).   Theor Appl Genet.   2004 -9   109(5)   986-95   15490100   10.1007/s00122-004-1710-0  
Wheat   Le. racemosus chromosome addition lines, KT020-00...   693   Kishii M, Yamada T, Sasakuma T, Tsujimoto H.   Production of wheat-Leymus racemosus chromosome addition lines.   Theor Appl Genet.   2004 -7   109(2)   255-60   15057417   10.1007/s00122-004-1631-y  
Barley   (OU)I444, (OU)E229, (OU)E215, (OU)T329,...   648   Taketa S, Kikuchi S, Awayama T, Yamamoto S, Ichii M, Kawasaki S.   Monophyletic origin of naked barley inferred from molecular analyses of a marker closely linked to the naked caryopsis gene (nud).   Theor Appl Genet.   2004 -5   108(7)   1236-42   14727032   10.1007/s00122-003-1560-1  
Rice   Local Varieties-Wild Strains   673   Yamanaka S, Nakamura I, Watanabe KN, Sato Y.   Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice.   Theor Appl Genet.   2004 -5   108(7)   1200-4   14740088   10.1007/s00122-003-1564-x  
Barley   Kobinkatagi   647   Kikuchi S, Taketa S, Ichii M, Kawasaki S.   Efficient fine mapping of the naked caryopsis gene ( nud) by HEGS (High Efficiency Genome Scanning)/AFLP in barley.   Theor Appl Genet.   2003 -12   108(1)   73-8   12942174   10.1007/s00122-003-1413-y  
Barley   ? Russia 6, H.E.S.4   646   Hori K, Kobayashi T, Shimizu A, Sato K, Takeda K, Kawasaki S.   Efficient construction of high-density linkage map and its application to QTL analysis in barley.   Theor Appl Genet.   2003 -9   107(5)   806-13   12838391   10.1007/s00122-003-1342-9  
Lotus / Glycine   G: wild soybean   841   Hong JS, Masuta C, Nakano M, Abe J, Uyeda I.   Adaptation of Cucumber mosaic virus soybean strains (SSVs) to cultivated and wild soybeans.   Theor Appl Genet.   2003 -6   107(1)   49-53   12835932   10.1007/s00122-003-1222-3  
Rice   Induced Mutation Lines   12615   Qu LQ, Wei XL, Satoh H, Kumamaru T, Ogawa M, Takaiwa F.   Biochemical and molecular characterization of a rice glutelin allele for the GluA-1 gene.   Theor Appl Genet.   2003 -6   107(1)   20-5   12835929   10.1007/s00122-003-1228-x  
Lotus / Glycine   G: C028, C015, C017, C011, C008, C021, C003, C061,...   844   Abe J, Xu DH, Suzuki Y, Kanazawa A, Shimamoto Y.   Soybean germplasm pools in Asia revealed by nuclear SSRs.   Theor Appl Genet.   2003 -2   106(3)   445-53   12589544   10.1007/s00122-002-1073-3  
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