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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Yeast   BY4330   49252   Numamoto M, Maekawa H, Kaneko Y.   Efficient genome editing by CRISPR/Cas9 with a tRNA-sgRNA fusion in the methylotrophic yeast Ogataea polymorpha.   J. Biosci. Bioeng.   2017 -7 -2   124(5)   487-492   28666889   10.1016/j.jbiosc.2017.06.001  
Yeast   pGK422   50380   Morita K, Nomura Y, Ishii J, Matsuda F, Kondo A, Shimizu H.   Heterologous expression of bacterial phosphoenol pyruvate carboxylase and Entner-Doudoroff pathway in Saccharomyces cerevisiae for improvement of isobutanol production.   J. Biosci. Bioeng.   2017 -5 -26   124(3)   263-270   28539187   10.1016/j.jbiosc.2017.04.005  
DNA material, General Microbes   Genomic DNA of Bacillus subtilis subsp. subtilis JCM 1465...   48084   Hoshino T, Hamada Y.   Estimation of the influence of sequencing errors and distribution of random-sequence tags on quantitative sequencing.   J. Biosci. Bioeng.   2017 -5 -2   124(3)   359-364   28457659   10.1016/j.jbiosc.2017.04.003  
General Microbes   JCM 19919   48442   Ng LM, Sudesh K.   Identification of a new polyhydroxyalkanoate (PHA) producer Aquitalea sp. USM4 (JCM 19919) and characterization of its PHA synthase.   J. Biosci. Bioeng.   2016 -10 -26   122(5)   550-557   27132174   10.1016/j.jbiosc.2016.03.024  
DNA material   Thermus thermophilus expression plasmid TEx01E06 (THR000502...   39655   Tajima K, Han X, Hashimoto Y, Satoh Y, Satoh T, Taguchi S.   In vitro synthesis of polyhydroxyalkanoates using thermostable acetyl-CoA synthetase, CoA transferase, and PHA synthase from thermotorelant bacteria.   J. Biosci. Bioeng.   2016 -6 -28   122(6)   660-665   27342638   10.1016/j.jbiosc.2016.06.001  
Yeast   pGK424, pGK425, pGK426   48079   Shen L, Nishimura Y, Matsuda F, Ishii J, Kondo A.   Overexpressing enzymes of the Ehrlich pathway and deleting genes of the competing pathway in Saccharomyces cerevisiae for increasing 2-phenylethanol production from glucose.   J. Biosci. Bioeng.   2016 -3 -16   122(1)   34-9   26975754   10.1016/j.jbiosc.2015.12.022  
General Microbes   JCM 20778   48441   Xiao Z, Awata T, Zhang D, Katayama A.   Denitrification by Pseudomonas stutzeri coupled with CO2 reduction by Sporomusa ovata with hydrogen as an electron donor assisted by solid-phase humin.   J. Biosci. Bioeng.   2016 -3 -16   122(3)   307-13   26975755   10.1016/j.jbiosc.2016.02.002  
DNA material   pDB05-Cagpd1 (RDB14266); T-easy-Cagpd2 (RDB14391...   45804   Mizushima D, Iwata H, Ishimaki Y, Ogihara J, Kato J, Kasumi T.   Two glycerol 3-phosphate dehydrogenase isogenes from Candida versatilis SN-18 play an important role in glycerol biosynthesis under osmotic stress.   J. Biosci. Bioeng.   2016 -2 -26   121(5)   523-9   26906228   10.1016/j.jbiosc.2015.10.002  
Yeast   BYP148   36114   Mizushima D, Iwata H, Ishimaki Y, Ogihara J, Kato J, Kasumi T.   Two glycerol 3-phosphate dehydrogenase isogenes from Candida versatilis SN-18 play an important role in glycerol biosynthesis under osmotic stress.   J. Biosci. Bioeng.   2016 -2 -26   121(5)   523-9   26906228   10.1016/j.jbiosc.2015.10.002  
General Microbes   JCM 20778   48443   Xiao Z, Awata T, Zhang D, Zhang C, Li Z, Katayama A.   Enhanced denitrification of Pseudomonas stutzeri by a bioelectrochemical system assisted with solid-phase humin.   J. Biosci. Bioeng.   2016 -2 -26   122(1)   85-91   26905325   10.1016/j.jbiosc.2015.11.004  
Human and Animal Cells   Hep G2(RCB1886)   37595   Takei T, Kitazono Z, Ozuno Y, Yoshinaga T, Nishimata H, Yoshida M.   Vascular-like network prepared using hollow hydrogel microfibers.   J. Biosci. Bioeng.   2015 -7 -23   121(3)   336-40   26199226   10.1016/j.jbiosc.2015.06.018  
General Microbes   JCM 12802   48440   Wang C, Wang H, Ma R, Shi P, Niu C, Luo H, Yang P, Yao B.   Biochemical characterization of a novel thermophilic α-galactosidase from Talaromyces leycettanus JCM12802 with significant transglycosylation activity.   J. Biosci. Bioeng.   2015 -6 -20   121(1)   7-12   26087712   10.1016/j.jbiosc.2015.04.023  
Mice   C57BL-p53+/-(RBRC01361)   34775   Okahashi N, Kohno S, Kitajima S, Matsuda F, Takahashi C, Shimizu H.   Metabolic characterization of cultured mammalian cells by mass balance analysis, tracer labeling experiments and computer-aided simulations.   J. Biosci. Bioeng.   2015 -5 -6   120(6)   725-31   25936961   10.1016/j.jbiosc.2015.04.003  
Human and Animal Cells     37050   Minamihata K, Maeda Y, Yamaguchi S, Ishihara W, Ishiwatari A, Takamori S, Yamahira S, Nagamune T.   Photosensitizer and polycationic peptide-labeled streptavidin as a nano-carrier for light-controlled protein transduction.   J. Biosci. Bioeng.   2015 -5 -4   120(6)   630-6   25935501   10.1016/j.jbiosc.2015.04.001  
Human and Animal Cells   Hep G2(RCB1886)   37036   Takei T, Aokawa R, Shigemitsu T, Kawakami K, Yoshida M.   Fabrication of uniformly cell-laden porous scaffolds using a gas-in-liquid templating technique.   J. Biosci. Bioeng.   2015 -4 -29   120(5)   577-81   25912452   10.1016/j.jbiosc.2015.03.017  
Silkworms   f38   36121   Hayashi K, Lee JM, Tomozoe Y, Kusakabe T, Kamiya N.   Heme precursor injection is effective for Arthromyces ramosus peroxidase fusion protein production by a silkworm expression system.   J. Biosci. Bioeng.   2015 -4 -25   120(4)   384-6   25907573   10.1016/j.jbiosc.2015.02.013  
Human and Animal Cells   293(RCB1637)   36923   Ono A, Ito A, Suzuki T, Yamaguchi M, Kawabe Y, Kamihira M.   DNA damage-responsive transgene expression mediated by the p53 promoter with transcriptional amplification.   J. Biosci. Bioeng.   2015 -3 -17   120(4)   463-6   25772439   10.1016/j.jbiosc.2015.02.009  
Algae   NIES-2235   39741   Kong F, Yamasaki T, Kurniasih SD, Hou L, Li X, Ivanova N, Okada S, Ohama T.   Robust expression of heterologous genes by selection marker fusion system in improved Chlamydomonas strains.   J. Biosci. Bioeng.   2015 -2 -11   120(3)   239-45   25660568   10.1016/j.jbiosc.2015.01.005  
Yeast   NA   35127   Numamoto M, Tagami S, Ueda Y, Imabeppu Y, Sasano Y, Sugiyama M, Maekawa H, Harashima S.   Nuclear localization domains of GATA activator Gln3 are required for transcription of target genes through dephosphorylation in Saccharomyces cerevisiae.   J. Biosci. Bioeng.   2015 -2 -3   120(2)   121-7   25641578   10.1016/j.jbiosc.2014.12.017  
General Microbes   JCM 10246, JCM 11223, JCM 15650   40806   Morohoshi T, Tominaga Y, Someya N, Ikeda T.   Characterization of a novel thermostable N-acylhomoserine lactonase from the thermophilic bacterium Thermaerobacter marianensis.   J. Biosci. Bioeng.   2014 -12 -23   120(1)   1-5   25529553   10.1016/j.jbiosc.2014.11.014  
Chicken / Quail     33247   Kojima Y, Mizutani A, Okuzaki Y, Nishijima K, Kaneoka H, Sasamoto T, Miyake K, Iijima S.   Analyses of chicken sialyltransferases related to N-glycosylation.   J. Biosci. Bioeng.   2014 -12 -17   119(6)   623-8   25499752   10.1016/j.jbiosc.2014.11.009  
General Microbes   JCM 6891   40794   Mitsui R, Katayama H, Tanaka M.   Requirement of carbon dioxide for initial growth of facultative methylotroph, Acidomonas methanolica MB58.   J. Biosci. Bioeng.   2014 -12 -17   120(1)   31-5   25511787   10.1016/j.jbiosc.2014.11.016  
Human and Animal Cells     45398   Horie M, Ito A, Maki T, Kawabe Y, Kamihira M.   Magnetically labeled feeder system for mouse pluripotent stem cell culture.   J. Biosci. Bioeng.   2014 -12 -4   119(5)   614-6   25468421   10.1016/j.jbiosc.2014.10.020  
Algae   NIES-144   37157   Giannelli L, Yamada H, Katsuda T, Yamaji H.   Effects of temperature on the astaxanthin productivity and light harvesting characteristics of the green alga Haematococcus pluvialis.   J. Biosci. Bioeng.   2014 -12 -3   119(3)   345-50   25441445   10.1016/j.jbiosc.2014.09.002  
Yeast   NA   35103   Sasano Y, Yamagishi K, Tanikawa M, Nakazawa T, Sugiyama M, Kaneko Y, Harashima S.   Stabilization of mini-chromosome segregation during mitotic growth by overexpression of YCR041W and its application to chromosome engineering in Saccharomyces cerevisiae.   J. Biosci. Bioeng.   2014 -12 -3   119(5)   526-31   25454064   10.1016/j.jbiosc.2014.10.006  
Yeast   NA   35106   Sharmin D, Sasano Y, Sugiyama M, Harashima S.   Type 2C protein phosphatase Ptc6 participates in activation of the Slt2-mediated cell wall integrity pathway in Saccharomyces cerevisiae.   J. Biosci. Bioeng.   2014 -12 -3   119(4)   392-8   25449759   10.1016/j.jbiosc.2014.09.013  
Yeast   BY4741?   36188   Srichaisupakit A, Ohashi T, Misaki R, Fujiyama K.   Production of initial-stage eukaryotic N-glycan and its protein glycosylation in Escherichia coli.   J. Biosci. Bioeng.   2014 -12 -3   119(4)   399-405   25449758   10.1016/j.jbiosc.2014.09.016  
General Microbes   JCM 2413   40718   Toki T, Nakamura K, Kurauchi M, Kanno T, Katsuda Y, Ikai H, Hayashi E, Egusa H, Sasaki K, Niwano Y.   Synergistic interaction between wavelength of light and concentration of H₂O₂ in bactericidal activity of photolysis of H₂O₂.   J. Biosci. Bioeng.   2014 -10 -6   119(3)   358-62   25282638   10.1016/j.jbiosc.2014.08.015  
Silkworms     33120   Nomura T, Suganuma M, Higa Y, Kataoka Y, Funaguma S, Okazaki H, Suzuki T, Kobayashi I, Sezutsu H, Fujiyama K.   Improvement of glycosylation structure by suppression of β-N-acetylglucosaminidases in silkworm.   J. Biosci. Bioeng.   2014 -9 -7   119(2)   131-6   25193875   10.1016/j.jbiosc.2014.07.012  
General Microbes   JCM 1190   34335   Sakanaka M, Tamai S, Hirayama Y, Onodera A, Koguchi H, Kano Y, Yokota A, Fukiya S.   Functional analysis of bifidobacterial promoters in Bifidobacterium longum and Escherichia coli using the α-galactosidase gene as a reporter.   J. Biosci. Bioeng.   2014 -6 -17   118(5)   489-95   24932968   10.1016/j.jbiosc.2014.05.002  
Human and Animal Cells     45090   Horiguchi A, Yazaki K, Aoyagi M, Ohnuki Y, Kurosawa H.   Effective Rho-associated protein kinase inhibitor treatment to dissociate human iPS cells for suspension culture to form embryoid body-like cell aggregates.   J. Biosci. Bioeng.   2014 -5 -27   118(5)   588-92   24856590   10.1016/j.jbiosc.2014.04.008  
DNA material   pPICZalphaC_AotanA (RDB13297)   34859   Mizuno T, Shiono Y, Koseki T.   Biochemical characterization of Aspergillus oryzae native tannase and the recombinant enzyme expressed in Pichia pastoris.   J. Biosci. Bioeng.   2014 -5 -27   118(4)   392-5   24856589   10.1016/j.jbiosc.2014.04.003  
Prokaryotes E. coli   NA   35649   Nguyen MH, Ojima Y, Sakka M, Sakka K, Taya M.   Probing of exopolysaccharides with green fluorescence protein-labeled carbohydrate-binding module in Escherichia coli biofilms and flocs induced by bcsB overexpression.   J. Biosci. Bioeng.   2014 -4 -22   118(4)   400-5   24746734   10.1016/j.jbiosc.2014.03.005  
Human and Animal Cells     45027   Yamazaki H, Gotou S, Ito K, Kohashi S, Goto Y, Yoshiura Y, Sakai Y, Yabu H, Shimomura M, Nakazawa K.   Micropatterned culture of HepG2 spheroids using microwell chip with honeycomb-patterned polymer film.   J. Biosci. Bioeng.   2014 -4 -20   118(4)   455-60   24742630   10.1016/j.jbiosc.2014.03.006  
Lotus / Glycine   L. japonicus Gifu B-129 and Miyakojima MG-20   30998   Amin AN, Hayashi S, Bartlem DG.   Robust in vitro assay system for quantitative analysis of parasitic root-knot nematode infestation using Lotus japonicus.   J. Biosci. Bioeng.   2014 -4 -8   118(2)   205-13   24704340   10.1016/j.jbiosc.2014.01.006  
Human and Animal Cells     44978   Yamada R, Hattori K, Tachikawa S, Tagaya M, Sasaki T, Sugiura S, Kanamori T, Ohnuma K.   Control of adhesion of human induced pluripotent stem cells to plasma-patterned polydimethylsiloxane coated with vitronectin and γ-globulin.   J. Biosci. Bioeng.   2014 -3 -25   118(3)   315-22   24656306   10.1016/j.jbiosc.2014.02.009  
DNA material, General Microbes   Genomic DNA of Campylobacter jejuni subsp. jejuni JCM 2013...   30956   Srichaisupakit A, Ohashi T, Fujiyama K.   Identification of a protein glycosylation operon from Campylobacter jejuni JCM 2013 and its heterologous expression in Escherichia coli.   J. Biosci. Bioeng.   2014 -3 -22   118(3)   256-62   24650731   10.1016/j.jbiosc.2014.02.011  
Prokaryotes E. coli   NA   35637   Watanabe R, Doukyu N.   Improvement of organic solvent tolerance by disruption of the lon gene in Escherichia coli.   J. Biosci. Bioeng.   2014 -2 -28   118(2)   139-44   24571965   10.1016/j.jbiosc.2014.01.011  
Arabidopsis / Cultured plant cells, genes   rpc00001   30780   Asano M, Doi M, Baba K, Taniguchi M, Shibano M, Tanaka S, Sakaguchi M, Takaoka M, Hirata M, Yanagihara R, Nakahara R, Hayashi Y, Yamaguchi T, Matsumura H, Fujita Y.   Bio-imaging of hydroxyl radicals in plant cells using the fluorescent molecular probe rhodamine B hydrazide, without any pretreatment.   J. Biosci. Bioeng.   2014 -2 -4   118(1)   98-100   24485745   10.1016/j.jbiosc.2013.12.015  
Human and Animal Cells     44888   Ogawa A, Mizui S, Chida Y, Shimizu M, Terada S, Ohura T, Kobayashi K, Yasukawa S, Moriyama N.   Rakkyo fructan as a cryoprotectant for serum-free cryopreservation of mammalian cells.   J. Biosci. Bioeng.   2014 -2 -4   118(1)   101-6   24485744   10.1016/j.jbiosc.2013.12.010  
Chicken / Quail     30562   Kojima Y, Wakita J, Inayoshi Y, Suzuki R, Yamada Y, Kaneoka H, Nishijima K, Iijima S.   Galactosylation of human erythropoietin produced by chimeric chickens expressing galactosyltransferase.   J. Biosci. Bioeng.   2013 -12 -21   117(6)   676-9   24355574   10.1016/j.jbiosc.2013.11.010  
Human and Animal Cells     44797   Xu B, Ju Y, Song G.   Role of p38, ERK1/2, focal adhesion kinase, RhoA/ROCK and cytoskeleton in the adipogenesis of human mesenchymal stem cells.   J. Biosci. Bioeng.   2013 -12 -18   117(5)   624-31   24331979   10.1016/j.jbiosc.2013.10.018  
General Microbes   JCM 6425   34081   Takahashi M, Ohta T, Masaki K, Mizuno A, Goto-Yamamoto N.   Evaluation of microbial diversity in sulfite-added and sulfite-free wine by culture-dependent and -independent methods.   J. Biosci. Bioeng.   2013 -11 -19   117(5)   569-75   24239025   10.1016/j.jbiosc.2013.10.012  
Human and Animal Cells     44687   Aikawa H, Tamai M, Mitamura K, Itmainati F, Barber GN, Tagawa Y.   Innate immunity in an in vitro murine blastocyst model using embryonic and trophoblast stem cells.   J. Biosci. Bioeng.   2013 -10 -12   117(3)   358-65   24113362   10.1016/j.jbiosc.2013.09.001  
General Microbes   JCM 5546, JCM 5548, JCM 5697   34049   Sugawara A, Matsui D, Komeda H, Asano Y, Isobe K.   Characterization and application of aminoamide-oxidizing enzyme from Aspergillus carbonarius AIU 205.   J. Biosci. Bioeng.   2013 -10 -12   117(3)   263-8   24113361   10.1016/j.jbiosc.2013.08.019  
General Microbes   JCM 9400   34043   Takimura Y, Sakuradani E, Natsume Y, Miyake T, Ogawa J, Shimizu S.   Achlorophyllous alga Prototheca zopfii oxidizes n-alkanes with different carbon-chain lengths through a unique subterminal oxidation pathway.   J. Biosci. Bioeng.   2013 -10 -9   117(3)   275-7   24099955   10.1016/j.jbiosc.2013.09.004  
General Microbes   JCM 10317, JCM 10318, JCM 10323, JCM 1032...   34036   Watanabe T, Shinozaki Y, Yoshida S, Koitabashi M, Sameshima-Yamashita Y, Fujii T, Fukuoka T, Kitamoto HK.   Xylose induces the phyllosphere yeast Pseudozyma antarctica to produce a cutinase-like enzyme which efficiently degrades biodegradable plastics.   J. Biosci. Bioeng.   2013 -10 -8   117(3)   325-9   24095046   10.1016/j.jbiosc.2013.09.002  
Human and Animal Cells     44642   Yamazoe H, Sugiyama Y, El Omri A, Hagihara Y, Okada T.   Facile immunostaining and labeling of nonadherent cells using a microfluidic device to entrap the cells.   J. Biosci. Bioeng.   2013 -9 -17   117(3)   375-8   24035233   10.1016/j.jbiosc.2013.08.008  
Yeast   NA   27868   Laviña WA, Shahsavarani H, Saidi A, Sugiyama M, Kaneko Y, Harashima S.   Suppression mechanism of the calcium sensitivity in Saccharomyces cerevisiae ptp2Δmsg5Δ double disruptant involves a novel HOG-independent function of Ssk2, transcription factor Msn2 and the protein kinase A component Bcy1.   J. Biosci. Bioeng.   2013 -8 -21   117(2)   135-41   23953972   10.1016/j.jbiosc.2013.06.022  
General Microbes   JCM 1157   34014   Mu F, Masuda Y, Zendo T, Ono H, Kitagawa H, Ito H, Nakayama J, Sonomoto K.   Biological function of a DUF95 superfamily protein involved in the biosynthesis of a circular bacteriocin, leucocyclicin Q.   J. Biosci. Bioeng.   2013 -8 -3   117(2)   158-64   23906710   10.1016/j.jbiosc.2013.06.023  
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