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Species Resource name RRC ID Author Title Journal Published Volume Pages Pubmed ID DOI
Yeast     47910   Manjón E, Edreira T, Muñoz S, Sánchez Y.   Rgf1p (Rho1p GEF) is required for double-strand break repair in fission yeast.   Nucleic Acids Res.   2017 -3 -15       28334931   10.1093/nar/gkx176  
Prokaryotes E. coli   ME9780   36734   Ishihama A, Shimada T, Yamazaki Y.   Transcription profile of Escherichia coli: genomic SELEX search for regulatory targets of transcription factors.   Nucleic Acids Res.   2016 -3 -18   44(5)   2058-74   26843427   10.1093/nar/gkw051  
Drosophila   18497R-1,18497R-4   35974   Oswald F, Rodriguez P, Giaimo BD, Antonello ZA, Mira L, Mittler G, Thiel VN, Collins KJ, Tabaja N, Cizelsky W, Rothe M, Kühl SJ, Kühl M, Ferrante F, Hein K, Kovall RA, Dominguez M, Borggrefe T.   A phospho-dependent mechanism involving NCoR and KMT2D controls a permissive chromatin state at Notch target genes.   Nucleic Acids Res.   2016 -2 -23       26912830   10.1093/nar/gkw105  
Yeast   FY18537   36219   Zabrady K, Adamus M, Vondrova L, Liao C, Skoupilova H, Novakova M, Jurcisinova L, Alt A, Oliver AW, Lehmann AR, Palecek JJ.   Chromatin association of the SMC5/6 complex is dependent on binding of its NSE3 subunit to DNA.   Nucleic Acids Res.   2016 -2 -18   44(3)   1064-79   26446992   10.1093/nar/gkv1021  
Yeast   BY25924, BY25925, BY25926   36016   Perez-Arnaiz P, Bruck I, Kaplan DL.   Mcm10 coordinates the timely assembly and activation of the replication fork helicase.   Nucleic Acids Res.   2016 -1 -8   44(1)   315-29   26582917   10.1093/nar/gkv1260  
DNA material   pcDNA3.1-FLAG/HA-DCP1 (RDB14236); pIRESneo-FLAG/H...   40058   Nishi K, Takahashi T, Suzawa M, Miyakawa T, Nagasawa T, Ming Y, Tanokura M, Ui-Tei K.   Control of the localization and function of a miRNA silencing component TNRC6A by Argonaute protein.   Nucleic Acids Res.   2015 -11 -16   43(20)   9856-73   26446993   10.1093/nar/gkv1026  
C.elegans   tm3713, tm1489, tm4586,   45651   Vandamme J, Sidoli S, Mariani L, Friis C, Christensen J, Helin K, Jensen ON, Salcini AE.   H3K23me2 is a new heterochromatic mark in Caenorhabditis elegans.   Nucleic Acids Res.   2015 -11 -16   43(20)   9694-710   26476455   10.1093/nar/gkv1063  
Drosophila   9791R-2   34870   Clemente P, Pajak A, Laine I, Wibom R, Wedell A, Freyer C, Wredenberg A.   SUV3 helicase is required for correct processing of mitochondrial transcripts.   Nucleic Acids Res.   2015 -9 -3   43(15)   7398-413   26152302   10.1093/nar/gkv692  
Yeast   FY17283   33263   Garg A, Futcher B, Leatherwood J.   A new transcription factor for mitosis: in Schizosaccharomyces pombe, the RFX transcription factor Sak1 works with forkhead factors to regulate mitotic expression.   Nucleic Acids Res.   2015 -8 -18   43(14)   6874-88   25908789   10.1093/nar/gkv274  
C.elegans   tm1897   32790   Rüegger S, Miki TS, Hess D, Großhans H.   The ribonucleotidyl transferase USIP-1 acts with SART3 to promote U6 snRNA recycling.   Nucleic Acids Res.   2015 -3 -31   43(6)   3344-57   25753661   10.1093/nar/gkv196  
Rats   database   33282   Shimoyama M, De Pons J, Hayman GT, Laulederkind SJ, Liu W, Nigam R, Petri V, Smith JR, Tutaj M, Wang SJ, Worthey E, Dwinell M, Jacob H.   The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease.   Nucleic Acids Res.   2015 -1   43(Database issue)   D743-50   25355511   10.1093/nar/gku1026  
C.elegans   tm892   45869   Tu S, Wu MZ, Wang J, Cutter AD, Weng Z, Claycomb JM.   Comparative functional characterization of the CSR-1 22G-RNA pathway in Caenorhabditis nematodes.   Nucleic Acids Res.   2015 -1   43(1)   208-24   25510497   10.1093/nar/gku1308  
Drosophila     32394   Baggio F, Bratic A, Mourier A, Kauppila TE, Tain LS, Kukat C, Habermann B, Partridge L, Larsson NG.   Drosophila melanogaster LRPPRC2 is involved in coordination of mitochondrial translation.   Nucleic Acids Res.   2014 -12 -16   42(22)   13920-38   25428350   10.1093/nar/gku1132  
Yeast   FY18530   31749   Lorenz A, Mehats A, Osman F, Whitby MC.   Rad51/Dmc1 paralogs and mediators oppose DNA helicases to limit hybrid DNA formation and promote crossovers during meiotic recombination.   Nucleic Acids Res.   2014 -12 -16   42(22)   13723-35   25414342   10.1093/nar/gku1219  
C.elegans   tm2839   45679   Arnold A, Rahman MM, Lee MC, Muehlhaeusser S, Katic I, Gaidatzis D, Hess D, Scheckel C, Wright JE, Stetak A, Boag PR, Ciosk R.   Functional characterization of C. elegans Y-box-binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes.   Nucleic Acids Res.   2014 -12 -1   42(21)   13353-69   25378320   10.1093/nar/gku1077  
Silkworms     33126   Shoji K, Hara K, Kawamoto M, Kiuchi T, Kawaoka S, Sugano S, Shimada T, Suzuki Y, Katsuma S.   Silkworm HP1a transcriptionally enhances highly expressed euchromatic genes via association with their transcription start sites.   Nucleic Acids Res.   2014 -10   42(18)   11462-71   25237056   10.1093/nar/gku862  
Yeast     35129   Kaboli S, Yamakawa T, Sunada K, Takagaki T, Sasano Y, Sugiyama M, Kaneko Y, Harashima S.   Genome-wide mapping of unexplored essential regions in the Saccharomyces cerevisiae genome: evidence for hidden synthetic lethal combinations in a genetic interaction network.   Nucleic Acids Res.   2014 -9   42(15)   9838-53   25104020   10.1093/nar/gku576  
Human and Animal Cells     45170   Tomaru Y, Hasegawa R, Suzuki T, Sato T, Kubosaki A, Suzuki M, Kawaji H, Forrest AR, Hayashizaki Y, , Shin JW, Suzuki H.   A transient disruption of fibroblastic transcriptional regulatory network facilitates trans-differentiation.   Nucleic Acids Res.   2014 -8   42(14)   8905-13   25013174   10.1093/nar/gku567  
Yeast     30561   Mahyous Saeyd SA, Ewert-Krzemieniewska K, Liu B, Caspari T.   Hyperactive Cdc2 kinase interferes with the response to broken replication forks by trapping S.pombe Crb2 in its mitotic T215 phosphorylated state.   Nucleic Acids Res.   2014 -7   42(12)   7734-47   24861625   10.1093/nar/gku452  
C.elegans   tm1630, tm3463   45787   Li T, Kelly WG.   A role for WDR5 in TRA-1/Gli mediated transcriptional control of the sperm/oocyte switch in C. elegans.   Nucleic Acids Res.   2014 -5   42(9)   5567-81   24682813   10.1093/nar/gku221  
DNA material   pNHK60 (RDB08468)   31355   Farr CJ, Antoniou-Kourounioti M, Mimmack ML, Volkov A, Porter AC.   The α isoform of topoisomerase II is required for hypercompaction of mitotic chromosomes in human cells.   Nucleic Acids Res.   2014 -4   42(7)   4414-26   24476913   10.1093/nar/gku076  
C.elegans   tm3473   28841   Miki TS, Rüegger S, Gaidatzis D, Stadler MB, Großhans H.   Engineering of a conditional allele reveals multiple roles of XRN2 in Caenorhabditis elegans development and substrate specificity in microRNA turnover.   Nucleic Acids Res.   2014 -4   42(6)   4056-67   24445807   10.1093/nar/gkt1418  
Prokaryotes B. subtilis     35656   Wiedermannová J, Sudzinová P, Kovaľ T, Rabatinová A, Šanderova H, Ramaniuk O, Rittich Š, Dohnálek J, Fu Z, Halada P, Lewis P, Krásny L.   Characterization of HelD, an interacting partner of RNA polymerase from Bacillus subtilis.   Nucleic Acids Res.   2014 -4   42(8)   5151-63   24520113   10.1093/nar/gku113  
DNA material, Prokaryotes E. coli   JW0187, GNP Clone, IRAK027I21 (HGX011013)   28464   Kogure H, Handa Y, Nagata M, Kanai N, Güntert P, Kubota K, Nameki N.   Identification of residues required for stalled-ribosome rescue in the codon-independent release factor YaeJ.   Nucleic Acids Res.   2014 -3   42(5)   3152-63   24322300   10.1093/nar/gkt1280  
Drosophila     28880   Giuliani G, Giuliani F, Volk T, Rabouille C.   The Drosophila RNA-binding protein HOW controls the stability of dgrasp mRNA in the follicular epithelium.   Nucleic Acids Res.   2014 -2   42(3)   1970-86   24217913   10.1093/nar/gkt1118  
Yeast     27313   Yamashita A, Takayama T, Iwata R, Yamamoto M.   A novel factor Iss10 regulates Mmi1-mediated selective elimination of meiotic transcripts.   Nucleic Acids Res.   2013 -11   41(21)   9680-7   23980030   10.1093/nar/gkt763  
Human and Animal Cells     44619   Li Y, Miyanari Y, Shirane K, Nitta H, Kubota T, Ohashi H, Okamoto A, Sasaki H.   Sequence-specific microscopic visualization of DNA methylation status at satellite repeats in individual cell nuclei and chromosomes.   Nucleic Acids Res.   2013 -10   41(19)   e186   23990328   10.1093/nar/gkt766  
Yeast     21795   Sugiyama T, Wanatabe N, Kitahata E, Tani T, Sugioka-Sugiyama R.   Red5 and three nuclear pore components are essential for efficient suppression of specific mRNAs during vegetative growth of fission yeast.   Nucleic Acids Res.   2013 -7   41(13)   6674-86   23658229   10.1093/nar/gkt363  
Prokaryotes E. coli   ME9062(BW25113)   35568   Arora S, Bhamidimarri SP, Bhattacharyya M, Govindan A, Weber MH, Vishveshwara S, Varshney U.   Distinctive contributions of the ribosomal P-site elements m2G966, m5C967 and the C-terminal tail of the S9 protein in the fidelity of initiation of translation in Escherichia coli.   Nucleic Acids Res.   2013 -5   41(9)   4963-75   23530111   10.1093/nar/gkt175  
Yeast   FY21635, FY21636, FY21637, FY21638, FY21649...   34919   Sasaki M, Kumagai H, Takegawa K, Tohda H.   Characterization of genome-reduced fission yeast strains.   Nucleic Acids Res.   2013 -5 -1   41(10)   5382-99   23563150   10.1093/nar/gkt233  
DNA material   pCMV-MAZ (RDB03219); pGEX-hMAZ (RDB05701)   27186   Cogoi S, Zorzet S, Rapozzi V, Géci I, Pedersen EB, Xodo LE.   MAZ-binding G4-decoy with locked nucleic acid and twisted intercalating nucleic acid modifications suppresses KRAS in pancreatic cancer cells and delays tumor growth in mice.   Nucleic Acids Res.   2013 -4   41(7)   4049-64   23471001   10.1093/nar/gkt127  
Prokaryotes E. coli   JW5413-KC(rimM)?   35543   Guo Q, Goto S, Chen Y, Feng B, Xu Y, Muto A, Himeno H, Deng H, Lei J, Gao N.   Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM and general features of the assembly process.   Nucleic Acids Res.   2013 -2 -1   41(4)   2609-20   23293003   10.1093/nar/gks1256  
Prokaryotes B. subtilis   JJS-DIn001, JJS-DIn002, JJS-DIn003, JJS-DIn004...   33711   Tanaka K, Henry CS, Zinner JF, Jolivet E, Cohoon MP, Xia F, Bidnenko V, Ehrlich SD, Stevens RL, Noirot P.   Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model.   Nucleic Acids Res.   2013 -1 -7   41(1)   687-99   23109554   10.1093/nar/gks963  
General Microbes   JCM 12380   27710   Armache JP, Anger AM, Márquez V, Franckenberg S, Fröhlich T, Villa E, Berninghausen O, Thomm M, Arnold GJ, Beckmann R, Wilson DN.   Promiscuous behaviour of archaeal ribosomal proteins: implications for eukaryotic ribosome evolution.   Nucleic Acids Res.   2013 -1   41(2)   1284-93   23222135   10.1093/nar/gks1259  
Rice, Information   Oryzabase   25690   Sato Y, Namiki N, Takehisa H, Kamatsuki K, Minami H, Ikawa H, Ohyanagi H, Sugimoto K, Itoh J, Antonio BA, Nagamura Y.   RiceFREND: a platform for retrieving coexpressed gene networks in rice.   Nucleic Acids Res.   2013 -1   41(Database issue)   D1214-21   23180784   10.1093/nar/gks1122  
DNA material   Genome Network Project Gateway Entry Clone, W01A062...   21530   Shin JW, Suzuki T, Ninomiya N, Kishima M, Hasegawa Y, Kubosaki A, Yabukami H, Hayashizaki Y, Suzuki H.   Establishment of single-cell screening system for the rapid identification of transcriptional modulators involved in direct cell reprogramming.   Nucleic Acids Res.   2012 -11   40(21)   e165   22879381   10.1093/nar/gks732  
DNA material, General Microbes   Genomic DNA of Aeropyrum pernix JCM 9820T (JGD07499...   21538   Kobayashi K, Saito K, Ishitani R, Ito K, Nureki O.   Structural basis for translation termination by archaeal RF1 and GTP-bound EF1α complex.   Nucleic Acids Res.   2012 -10   40(18)   9319-28   22772989   10.1093/nar/gks660  
Drosophila   9088R-2   21831   Lloret-Llinares M, Pérez-Lluch S, Rossell D, Morán T, Ponsa-Cobas J, Auer H, Corominas M, Azorín F.   dKDM5/LID regulates H3K4me3 dynamics at the transcription-start site (TSS) of actively transcribed developmental genes.   Nucleic Acids Res.   2012 -10   40(19)   9493-505   22904080   10.1093/nar/gks773  
C.elegans   tm1133, tm1108, tm1779   46268   Bess AS, Crocker TL, Ryde IT, Meyer JN.   Mitochondrial dynamics and autophagy aid in removal of persistent mitochondrial DNA damage in Caenorhabditis elegans.   Nucleic Acids Res.   2012 -9   40(16)   7916-31   22718972   10.1093/nar/gks532  
Human and Animal Cells     43890   Kameyama T, Suzuki H, Mayeda A.   Re-splicing of mature mRNA in cancer cells promotes activation of distant weak alternative splice sites.   Nucleic Acids Res.   2012 -9   40(16)   7896-906   22675076   10.1093/nar/gks520  
Drosophila   Df(3R)ED10953 (DGRC#150206), Df(2L)ED4559 (DGRC#150140...   21972   Lundberg LE, Figueiredo ML, Stenberg P, Larsson J.   Buffering and proteolysis are induced by segmental monosomy in Drosophila melanogaster.   Nucleic Acids Res.   2012 -7   40(13)   5926-37   22434883   10.1093/nar/gks245  
Prokaryotes E. coli   ME9062(BW25113), JW0658-KC   35484   Reiter V, Matschkal DM, Wagner M, Globisch D, Kneuttinger AC, Müller M, Carell T.   The CDK5 repressor CDK5RAP1 is a methylthiotransferase acting on nuclear and mitochondrial RNA.   Nucleic Acids Res.   2012 -7   40(13)   6235-40   22422838   10.1093/nar/gks240  
Drosophila   31617R-2,31617R-3   21884   Vujatovic O, Zaragoza K, Vaquero A, Reina O, Bernués J, Azorín F.   Drosophila melanogaster linker histone dH1 is required for transposon silencing and to preserve genome integrity.   Nucleic Acids Res.   2012 -7   40(12)   5402-14   22406835   10.1093/nar/gks224  
Prokaryotes E. coli   JW0931-KC, ME9062(BW25113)?   35478   Wang KT, Desmolaize B, Nan J, Zhang XW, Li LF, Douthwaite S, Su XD.   Structure of the bifunctional methyltransferase YcbY (RlmKL) that adds the m7G2069 and m2G2445 modifications in Escherichia coli 23S rRNA.   Nucleic Acids Res.   2012 -6   40(11)   5138-48   22362734   10.1093/nar/gks160  
Prokaryotes E. coli   JW0931-KC, OCL/R-series, ME4805(OCR55)   35479   Kimura S, Ikeuchi Y, Kitahara K, Sakaguchi Y, Suzuki T, Suzuki T.   Base methylations in the double-stranded RNA by a fused methyltransferase bearing unwinding activity.   Nucleic Acids Res.   2012 -5   40(9)   4071-85   22210896   10.1093/nar/gkr1287  
Yeast     22733   Shimoji K, Jakovljevic J, Tsuchihashi K, Umeki Y, Wan K, Kawasaki S, Talkish J, Woolford JL Jr, Mizuta K.   Ebp2 and Brx1 function cooperatively in 60S ribosomal subunit assembly in Saccharomyces cerevisiae.   Nucleic Acids Res.   2012 -5   40(10)   4574-88   22319211   10.1093/nar/gks057  
C.elegans   tm2572   46018   Asagoshi K, Lehmann W, Braithwaite EK, Santana-Santos L, Prasad R, Freedman JH, Van Houten B, Wilson SH.   Single-nucleotide base excision repair DNA polymerase activity in C. elegans in the absence of DNA polymerase β.   Nucleic Acids Res.   2012 -1   40(2)   670-81   21917855   10.1093/nar/gkr727  
DNA material, Yeast   FY14145, FY14191, pDUAL-FFH1 (RDB06185), S. p...   12549   Kühl I, Dujeancourt L, Gaisne M, Herbert CJ, Bonnefoy N.   A genome wide study in fission yeast reveals nine PPR proteins that regulate mitochondrial gene expression.   Nucleic Acids Res.   2011 -10   39(18)   8029-41   21727087   10.1093/nar/gkr511  
Prokaryotes E. coli   JW0618-KC, JW3216-KC, JW2263-KC   35416   Delvillani F, Papiani G, Dehò G, Briani F.   S1 ribosomal protein and the interplay between translation and mRNA decay.   Nucleic Acids Res.   2011 -9 -1   39(17)   7702-15   21685451   10.1093/nar/gkr417  
Arabidopsis / Cultured plant cells, genes   pda14026   15342   Leihne V, Kirpekar F, Vågbø CB, van den Born E, Krokan HE, Grini PE, Meza TJ, Falnes PØ.   Roles of Trm9- and ALKBH8-like proteins in the formation of modified wobble uridines in Arabidopsis tRNA.   Nucleic Acids Res.   2011 -9 -1   39(17)   7688-701   21653555   10.1093/nar/gkr406  
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