RRC ID |
81308
|
Author |
Yamanaka S, Horiuchi Y, Matsuoka S, Kido K, Nishino K, Maeno M, Shibata N, Kosako H, Sawasaki T.
|
Title |
A proximity biotinylation-based approach to identify protein-E3 ligase interactions induced by PROTACs and molecular glues.
|
Journal |
Nat Commun
|
Abstract |
Proteolysis-targeting chimaeras (PROTACs) as well as molecular glues such as immunomodulatory drugs (IMiDs) and indisulam are drugs that induce interactions between substrate proteins and an E3 ubiquitin ligases for targeted protein degradation. Here, we develop a workflow based on proximity-dependent biotinylation by AirID to identify drug-induced neo-substrates of the E3 ligase cereblon (CRBN). Using AirID-CRBN, we detect IMiD-dependent biotinylation of CRBN neo-substrates in vitro and identify biotinylated peptides of well-known neo-substrates by mass spectrometry with high specificity and selectivity. Additional analyses reveal ZMYM2 and ZMYM2-FGFR1 fusion protein-responsible for the 8p11 syndrome involved in acute myeloid leukaemia-as CRBN neo-substrates. Furthermore, AirID-DCAF15 and AirID-CRBN biotinylate neo-substrates targeted by indisulam and PROTACs, respectively, suggesting that this approach has the potential to serve as a general strategy for characterizing drug-inducible protein-protein interactions in cells.
|
Volume |
13(1)
|
Pages |
183
|
Published |
2022-1-10
|
DOI |
10.1038/s41467-021-27818-z
|
PII |
10.1038/s41467-021-27818-z
|
PMID |
35013300
|
PMC |
PMC8748630
|
MeSH |
Adaptor Proteins, Signal Transducing / genetics*
Adaptor Proteins, Signal Transducing / metabolism
Biological Assay*
Biotinylation
Cell Line, Tumor
DNA-Binding Proteins / genetics*
DNA-Binding Proteins / metabolism
Gene Expression Regulation
HEK293 Cells
Hepatocytes / cytology
Hepatocytes / drug effects
Hepatocytes / metabolism*
Humans
Immunologic Factors / pharmacology
Intracellular Signaling Peptides and Proteins / genetics
Intracellular Signaling Peptides and Proteins / metabolism
Lymphocytes / cytology
Lymphocytes / drug effects
Lymphocytes / metabolism*
Neurons / cytology
Neurons / drug effects
Neurons / metabolism
Protein Binding
Protein Interaction Mapping
Proteolysis / drug effects
Receptor, Fibroblast Growth Factor, Type 1 / genetics
Receptor, Fibroblast Growth Factor, Type 1 / metabolism
Substrate Specificity
Sulfonamides / pharmacology
Transcription Factors / genetics*
Transcription Factors / metabolism
Ubiquitin-Protein Ligases / genetics*
Ubiquitin-Protein Ligases / metabolism
|
Resource |
DNA material |
pCAGGS (RDB08938)
CSII-CMV-MCS-IRES2-Bsd (RDB04385)
pCMV-VSV-G-RSV-Rev (RDB04393)
pCAG-HIVgp (RDB04394) |